RNA id: unassigned_transcript_667


Basic Information

Item Value
RNA id unassigned_transcript_667
length 72
RNA type tRNA
GC content 0.60
exon number 1
gene id trnam-cau_30
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 389760 ~ 389831 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agcagagtgGCGCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCGAAACCATCCTCTGcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189189 lncRNA downstream 15544 373837 ~ 374216 (-) True G140268
XR_005641430.1 lncRNA downstream 20640 368338 ~ 369120 (-) True LOC120572356
TU189185 lncRNA downstream 51997 337542 ~ 337763 (-) True G140264
TU189175 lncRNA downstream 80139 309384 ~ 309621 (-) True G140254
TU189170 lncRNA downstream 108897 280547 ~ 280863 (-) True G140249
TU189191 lncRNA upstream 30185 420016 ~ 420235 (-) True G140270
XR_005641692.1 lncRNA upstream 31096 420927 ~ 421529 (-) True LOC120573351
TU189196 lncRNA upstream 52825 442656 ~ 443015 (-) True G140275
TU189206 lncRNA upstream 109427 499258 ~ 499616 (-) True G140285
XR_005641418.1 lncRNA upstream 110409 500240 ~ 523058 (-) True LOC120572316
XM_039823396.1 mRNA downstream 251523 135443 ~ 138237 (-) True LOC120573587
XM_039823400.1 mRNA upstream 210803 600634 ~ 606718 (-) False LOC120573590
XM_039823401.1 mRNA upstream 210803 600634 ~ 606718 (-) True LOC120573590
XM_039823311.1 mRNA upstream 516714 906545 ~ 913680 (-) True LOC120573525
XM_039822700.1 mRNA upstream 628427 1018258 ~ 1429717 (-) False sorcs2
XM_039822701.1 mRNA upstream 628427 1018258 ~ 1429717 (-) False sorcs2
unassigned_transcript_666 other downstream 1138 388551 ~ 388622 (-) True trnam-cau_29
unassigned_transcript_665 other downstream 4402 385277 ~ 385358 (-) True trnal-aag_4
unassigned_transcript_664 other downstream 6239 383440 ~ 383521 (-) True trnal-uag_1
unassigned_transcript_663 other downstream 6913 382776 ~ 382847 (-) True trnam-cau_28
unassigned_transcript_662 other downstream 7979 381700 ~ 381781 (-) True trnal-aag_3
unassigned_transcript_668 other upstream 3425 393256 ~ 393327 (-) True trnam-cau_31
unassigned_transcript_669 other upstream 5269 395100 ~ 395171 (-) True trnam-cau_32
unassigned_transcript_670 other upstream 7340 397171 ~ 397242 (-) True trnam-cau_33
unassigned_transcript_671 other upstream 8928 398759 ~ 398830 (-) True trnam-cau_34
unassigned_transcript_672 other upstream 13872 403703 ~ 403774 (-) True trnam-cau_35