RNA id: unassigned_transcript_676


Basic Information

Item Value
RNA id unassigned_transcript_676
length 72
RNA type tRNA
GC content 0.60
exon number 1
gene id trnam-cau_39
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 413368 ~ 413439 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agcagagtgGCGCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCGAAACCATCCTCTGcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189189 lncRNA downstream 39152 373837 ~ 374216 (-) True G140268
XR_005641430.1 lncRNA downstream 44248 368338 ~ 369120 (-) True LOC120572356
TU189185 lncRNA downstream 75605 337542 ~ 337763 (-) True G140264
TU189175 lncRNA downstream 103747 309384 ~ 309621 (-) True G140254
TU189170 lncRNA downstream 132505 280547 ~ 280863 (-) True G140249
TU189191 lncRNA upstream 6577 420016 ~ 420235 (-) True G140270
XR_005641692.1 lncRNA upstream 7488 420927 ~ 421529 (-) True LOC120573351
TU189196 lncRNA upstream 29217 442656 ~ 443015 (-) True G140275
TU189206 lncRNA upstream 85819 499258 ~ 499616 (-) True G140285
XR_005641418.1 lncRNA upstream 86801 500240 ~ 523058 (-) True LOC120572316
XM_039823396.1 mRNA downstream 275131 135443 ~ 138237 (-) True LOC120573587
XM_039823400.1 mRNA upstream 187195 600634 ~ 606718 (-) False LOC120573590
XM_039823401.1 mRNA upstream 187195 600634 ~ 606718 (-) True LOC120573590
XM_039823311.1 mRNA upstream 493106 906545 ~ 913680 (-) True LOC120573525
XM_039822700.1 mRNA upstream 604819 1018258 ~ 1429717 (-) False sorcs2
XM_039822701.1 mRNA upstream 604819 1018258 ~ 1429717 (-) False sorcs2
unassigned_transcript_675 other downstream 3560 409737 ~ 409808 (-) True trnam-cau_38
unassigned_transcript_674 other downstream 4748 408549 ~ 408620 (-) True trnam-cau_37
unassigned_transcript_673 other downstream 6344 406953 ~ 407024 (-) True trnam-cau_36
unassigned_transcript_672 other downstream 9594 403703 ~ 403774 (-) True trnam-cau_35
unassigned_transcript_671 other downstream 14538 398759 ~ 398830 (-) True trnam-cau_34
unassigned_transcript_677 other upstream 2358 415797 ~ 415868 (-) True trnam-cau_40
unassigned_transcript_678 other upstream 3571 417010 ~ 417081 (-) True trnam-cau_41
unassigned_transcript_679 other upstream 5496 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_680 other upstream 13964 427403 ~ 427484 (-) True trnal-aag_5
TU189195 other upstream 30111 443550 ~ 451670 (-) True G140274