RNA id: unassigned_transcript_680



Basic Information


Item Value
RNA id unassigned_transcript_680
length 82
RNA type tRNA
GC content 0.60
exon number 1
gene id trnal-aag_5
representative True

Chromosome Information


Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 427403 ~ 427484 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GGTAGTGTGGCCGAGTGGTCTAAGGCGCTGGATTAAGGCCCCAGTCTCTCTGGaggcgtgggttcaaatcccaccacTGCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005641692.1 lncRNA downstream 5874 420927 ~ 421529 (-) True LOC120573351
TU189191 lncRNA downstream 7168 420016 ~ 420235 (-) True G140270
TU189189 lncRNA downstream 53187 373837 ~ 374216 (-) True G140268
XR_005641430.1 lncRNA downstream 58283 368338 ~ 369120 (-) True LOC120572356
TU189185 lncRNA downstream 89640 337542 ~ 337763 (-) True G140264
TU189196 lncRNA upstream 15172 442656 ~ 443015 (-) True G140275
TU189206 lncRNA upstream 71774 499258 ~ 499616 (-) True G140285
XR_005641418.1 lncRNA upstream 72756 500240 ~ 523058 (-) True LOC120572316
TU189213 lncRNA upstream 128918 556402 ~ 556667 (-) True G140291
XR_005641701.1 lncRNA upstream 197729 625213 ~ 626442 (-) True LOC120573382
XM_039823396.1 mRNA downstream 289166 135443 ~ 138237 (-) True LOC120573587
XM_039823400.1 mRNA upstream 173150 600634 ~ 606718 (-) False LOC120573590
XM_039823401.1 mRNA upstream 173150 600634 ~ 606718 (-) True LOC120573590
XM_039823311.1 mRNA upstream 479061 906545 ~ 913680 (-) True LOC120573525
XM_039822700.1 mRNA upstream 590774 1018258 ~ 1429717 (-) False sorcs2
XM_039822701.1 mRNA upstream 590774 1018258 ~ 1429717 (-) False sorcs2
unassigned_transcript_679 other downstream 8397 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 10322 417010 ~ 417081 (-) True trnam-cau_41
unassigned_transcript_677 other downstream 11535 415797 ~ 415868 (-) True trnam-cau_40
unassigned_transcript_676 other downstream 13964 413368 ~ 413439 (-) True trnam-cau_39
unassigned_transcript_675 other downstream 17595 409737 ~ 409808 (-) True trnam-cau_38
TU189195 other upstream 16066 443550 ~ 451670 (-) True G140274
TU189682 other upstream 1623997 2051481 ~ 2058191 (-) True G140615
TU190151 other upstream 3727440 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 3847167 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 3847167 4274651 ~ 4275274 (-) False G141027