RNA id: TU203998


Basic Information

Item Value
RNA id TU203998
length 1571
lncRNA type read_through
GC content 0.43
exon number 2
gene id G150681
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 1136159 ~ 1217724 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAACACGTGCCGTCCTCATGTGATGTAAAAACCTAAAGCAGAAATTAAGAGAAACTCTGACGtgtttaaagggacagttcaggTGTTTGTtcagtgtgttagctacagtagacgGCGGTCGGCACGAcaacagtttggagaagcagcgGCCGctggttcgactccgacctgtggtcCTTTGCTGCTTGTCGTCCTCCTCTCGCTCCCctttgtcttcagctgtcctgtaagaataaaggccttaaatgcccaaaaataaataaaaataaaaaaattatcttaaagcgcccatattctgctcatcttcaggttcataactgtattttgaggttgtaccagaataggtttacatggtttaataatcaaaaaacaccatattttagttgtactgcacattgctgcagctcctcttttcaccctgtgttcaggtttctgttttagctacagagtgagacatctcttcttctgtactatctttgattgcactcgcacatgctcagtagctcagatgtagctcatgtcagctatctccatagacagtaaaagaaaggctgtttctccaacttcagtcagttccaaggcaggatcagctgggagacttcttctaaaccagggagcacatggaagtagttcttctggagattatggtgaacttgtgtgtgttgtagcagagCTTTtctattgagaacgagctagcatgctagcgctagcagctaacggtctattcagaaaccatatctcacccagaacagcatggatgggtcttttttaaagtgtgtatgcgtgtggaagcaccaaagacacaaaataactccccaaatcccaggaaaaagtgattttttgtcataatatgggcactttgaAAAACAGAAGAACGGAGAGAAATCAGCATTTCATTAATGTTGGTGTTGATGAGTGGACACAGACAGCTGGTGATGAAGACTTTTTATCAGTGAAAACAGGATGATGGGATTTATTTGGGATTAATTTGAGGACAAACAATGTTATTATGAAGATGCTGTAAATCCTTGTTGTGTTAGTTTAGgatatgggctgaaatatgggccACCACAAACGGaatttgagtcatttttattttaatttgaattgCTACCGGTGGgttgtgagaactgaatgtgaacacacacacacacacacacacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacacacacacacacacacacacacacacagacacacagacacacacacacacatacacacacacacagacacacacacacagacagacagacagacacacacacacacatacacacacacacagacacacacacacagacacacacatagacacacagaaacacacacagacacgcacacacacacacacacagagagacacagagacacacacacagacacacacacacactcacagagacacagagacacacacacagacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204000 lncRNA downstream 25901 1107759 ~ 1110258 (-) True G150682
TU204012 lncRNA downstream 56224 1079208 ~ 1079935 (-) True G150692
TU203742 lncRNA downstream 112597 1022036 ~ 1023562 (-) False G150515
TU203944 lncRNA downstream 147013 988912 ~ 989146 (-) True G150675
TU203926 lncRNA downstream 166957 965657 ~ 969202 (-) True G150659
TU204002 lncRNA upstream 610 1218334 ~ 1219080 (-) True G150684
TU203975 lncRNA upstream 17468 1235192 ~ 1341734 (-) True G150679
TU203985 lncRNA upstream 23900 1241624 ~ 1339779 (-) False G150679
TU204058 lncRNA upstream 27204 1244928 ~ 1247169 (-) False G150706
TU204059 lncRNA upstream 27204 1244928 ~ 1247169 (-) True G150706
XM_039823727.1 mRNA downstream 445254 684486 ~ 690905 (-) False swsap1
XM_039823726.1 mRNA downstream 445254 684486 ~ 690905 (-) True swsap1
XM_039824566.1 mRNA downstream 599935 533532 ~ 536224 (-) True elof1
XM_039823901.1 mRNA downstream 792587 328685 ~ 343572 (-) False LOC120573973
XM_039823698.1 mRNA upstream 105 1217829 ~ 1242261 (-) True tlcd3ba
XM_039823700.1 mRNA upstream 34380 1252104 ~ 1253365 (-) False LOC120573837
XM_039823699.1 mRNA upstream 34380 1252104 ~ 1253365 (-) True LOC120573837
XM_039823694.1 mRNA upstream 38035 1255759 ~ 1291070 (-) False nlk1
XM_039823693.1 mRNA upstream 38035 1255759 ~ 1291070 (-) True nlk1
TU203743 other downstream 112597 1022036 ~ 1023562 (-) True G150515
TU203749 other downstream 397430 736721 ~ 738729 (-) True G150519
TU203760 other downstream 447042 667677 ~ 689117 (-) True G150530
TU203786 other downstream 875241 260536 ~ 260918 (-) True G150554
TU203701 other downstream 946740 148618 ~ 189419 (-) True G150487
TU204049 other upstream 20518 1238242 ~ 1239990 (-) True G150705
TU204050 other upstream 21701 1239425 ~ 1239990 (-) False G150705
TU204064 other upstream 84931 1302655 ~ 1313347 (-) False LOC120573832
XR_005641991.1 other upstream 239023 1456747 ~ 1460981 (-) True LOC120575422
XR_005641992.1 other upstream 239023 1456747 ~ 1458866 (-) False LOC120575422

Expression Profile