RNA id: TU204000



Basic Information


Item Value
RNA id TU204000
length 1517
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G150682
representative True

Chromosome Information


Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 1107759 ~ 1110258 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GTAGAGTTTAAAGTTTTGTGAAGGTTTAATTGAATTGTAGTTACATTTCTAGTTCACACAAGTGGATTACAGATCCAGAGACAGTAACGGTAACAACATAAATACACCgtaataaaaaactaaacatgtGATTAAGACATTCTCAGGAGTTGTCAGTAAAAATCAAAAGTAAAGCTCAAAAATGAACACACCATCTAAGATCCCTTTAACAACGTCAGACAGATACTGTGGACAACgcaaatgacaaaaatgaacTTTAAAAACAACTAAGAAGTGTAATTCTTCAGAGTGATTGTGACAGGAGAAATGCTGGTGGTAATTTTGGGGGATTTCCAAAGCTGACCTGCTGTTACATTATTCTGATCACCGTGtgaaggcgctgacacaccgcgccgataatcggccgtctgacagtctggcgaggtcggtgactcgagtctgttcggtgtggtCTGAGCTGTCGTCAGTCAGAGGAGCCGTTGGCTTTAATTTGGGCCGATTTAGCTTGCTGGGTcagagggcgggcagtcggactcaatgacccatctgattggtggagagctaacccggaaataatgagcgtgactagagtctctcaaaatctgatgaaaatcttttaaactgacctttgttgatctgaaatgaagacagattcaggaactacacacacacacacacacacacacacacacacacacagagacacacacacacacacacagagacacacagacacacacacacagagacacacagacacacacacacacacacacagacacacagcctatttctctctccagatgtttccagtaacatgtgtctgtgaactattttagtctgatatgagatcagattctgaacgagacgccatgatggtcagggagcagccagacccatgtgacacgttcgtccaatcagctgccggttttcattttttgggcgacaacacagattagcgccgcctgttgctatggagatgtattaggtctcgtctcttcggtgtgttcaaCTTTCTGGAccgactcggggagactgacCAGTCGGCCGTcagcttggtgtgtcagagcctttacagGTGGAGTCTGTTTCTGGGTGATTTCTCTTTCATTAGATCATCTGTAGAGGGCACATTTAGAAATATAAAAGCTAGGCTTAGTTTCTAAGTTTGTGCGGTAGAAATGTTATTTCCTGTGCGTTTGTCTCTTGATCAATCAGAGTGAAACATCTCAATAACTGTCGGAAGGATCGTCATCAAATTTGGTTCAGCTGTTCATGTTTGCCTCGCGGTTAATTATAATAACTTTTCATTCATCACCAGGtataatagacctttttcacagcagacacgTTGACGTGTCATAGTAGgaacagcacaggtgtattcaaaccattactgatggctgcattccacttaggagagaccctggtattaaaccattactgatggctgcattccacttaggagaggtcctggtattaaaccattactgatggctgcattccacttaggagag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU204012 lncRNA downstream 27824 1079208 ~ 1079935 (-) True G150692
TU203742 lncRNA downstream 84197 1022036 ~ 1023562 (-) False G150515
TU203944 lncRNA downstream 118613 988912 ~ 989146 (-) True G150675
TU203926 lncRNA downstream 138557 965657 ~ 969202 (-) True G150659
TU203885 lncRNA downstream 382629 724718 ~ 725130 (-) True G150627
TU203998 lncRNA upstream 25901 1136159 ~ 1217724 (-) False G150681
TU204037 lncRNA upstream 59787 1170045 ~ 1174023 (-) True G150694
TU204021 lncRNA upstream 60035 1170293 ~ 1174023 (-) False G150694
TU204003 lncRNA upstream 81901 1192159 ~ 1194472 (-) True G150685
TU204044 lncRNA upstream 82419 1192677 ~ 1194079 (-) True G150701
XM_039823727.1 mRNA downstream 416854 684486 ~ 690905 (-) False swsap1
XM_039823726.1 mRNA downstream 416854 684486 ~ 690905 (-) True swsap1
XM_039824566.1 mRNA downstream 571535 533532 ~ 536224 (-) True elof1
XM_039823901.1 mRNA downstream 764187 328685 ~ 343572 (-) False LOC120573973
XM_039823689.1 mRNA upstream 660 1110918 ~ 1166720 (-) True LOC120573830
XM_039824568.1 mRNA upstream 43171 1153429 ~ 1213566 (-) True sh2b1
XM_039823698.1 mRNA upstream 107571 1217829 ~ 1242261 (-) True tlcd3ba
XM_039823700.1 mRNA upstream 141846 1252104 ~ 1253365 (-) False LOC120573837
XM_039823699.1 mRNA upstream 141846 1252104 ~ 1253365 (-) True LOC120573837
TU203743 other downstream 84197 1022036 ~ 1023562 (-) True G150515
TU203749 other downstream 369030 736721 ~ 738729 (-) True G150519
TU203760 other downstream 418642 667677 ~ 689117 (-) True G150530
TU203786 other downstream 846841 260536 ~ 260918 (-) True G150554
TU203701 other downstream 918340 148618 ~ 189419 (-) True G150487
TU204033 other upstream 60035 1170293 ~ 1174023 (-) False G150694
TU203947 other upstream 68113 1178371 ~ 1200218 (-) False sh2b1
TU204049 other upstream 127984 1238242 ~ 1239990 (-) True G150705
TU204050 other upstream 129167 1239425 ~ 1239990 (-) False G150705
TU204064 other upstream 192397 1302655 ~ 1313347 (-) False LOC120573832

Expression Profile