RNA id: TU204002


Basic Information

Item Value
RNA id TU204002
length 543
lncRNA type intronic
GC content 0.54
exon number 3
gene id G150684
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 1218334 ~ 1219080 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gctgctgctgctactgctactactgctgctgctgctactgctgctgctgctgctgctgctactgctgctgctgctgctactgctgctactgctgctactgctgctgctgctactgctgctgctgctactactgctgctgctgctgctgctgctgcgctgctgctactgctactgctgctactgctactactgctgctgctactgctgtttAATCGCGTCCATCGTGTTTATCTGCTAATTCAAACATGGCGGTCACAAGTTTCTGTTTGTCTTGTTGGTCACGGTAACCCCGCCCTCAGGTATGCACCTATCCCGGTGCTCTGTGTTTCAGGTATGGACCTATCCCGGTGCTCTTTGTTTCAGGTATGCACCTATCCCGGTGCTCTGTGTTTCAGGTATGCACCTATCCCGGTGCTCTGTGTTTCAGGTATGCACCTATCCCGGTGCTCTGTGTTTCAGGTATGCATCTATCCCGGTGCTCTGTGTTTCAGGTATGCACCTATCCCGGTGCTCTGTGTTTCAGGTATGCACCTATCCCGGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203998 lncRNA downstream 610 1136159 ~ 1217724 (-) False G150681
TU203997 lncRNA downstream 610 1214611 ~ 1217724 (-) True G150681
TU204045 lncRNA downstream 14506 1203506 ~ 1203828 (-) True G150702
TU204003 lncRNA downstream 23862 1192159 ~ 1194472 (-) True G150685
TU204044 lncRNA downstream 24255 1192677 ~ 1194079 (-) True G150701
TU203975 lncRNA upstream 16112 1235192 ~ 1341734 (-) True G150679
TU203985 lncRNA upstream 22544 1241624 ~ 1339779 (-) False G150679
TU204058 lncRNA upstream 25848 1244928 ~ 1247169 (-) False G150706
TU204059 lncRNA upstream 25848 1244928 ~ 1247169 (-) True G150706
TU204061 lncRNA upstream 25848 1244928 ~ 1247230 (-) False G150706
XM_039824568.1 mRNA downstream 4768 1153429 ~ 1213566 (-) True sh2b1
XM_039823689.1 mRNA downstream 51614 1110918 ~ 1166720 (-) True LOC120573830
XM_039823727.1 mRNA downstream 527429 684486 ~ 690905 (-) False swsap1
XM_039823726.1 mRNA downstream 527429 684486 ~ 690905 (-) True swsap1
XM_039824566.1 mRNA downstream 682110 533532 ~ 536224 (-) True elof1
XM_039823700.1 mRNA upstream 33024 1252104 ~ 1253365 (-) False LOC120573837
XM_039823699.1 mRNA upstream 33024 1252104 ~ 1253365 (-) True LOC120573837
XM_039823694.1 mRNA upstream 36679 1255759 ~ 1291070 (-) False nlk1
XM_039823693.1 mRNA upstream 36679 1255759 ~ 1291070 (-) True nlk1
XM_039824580.1 mRNA upstream 79296 1298376 ~ 1302291 (-) True LOC120574280
TU203947 other downstream 18116 1178371 ~ 1200218 (-) False sh2b1
TU204033 other downstream 44311 1170293 ~ 1174023 (-) False G150694
TU203743 other downstream 194772 1022036 ~ 1023562 (-) True G150515
TU203749 other downstream 479605 736721 ~ 738729 (-) True G150519
TU203760 other downstream 529217 667677 ~ 689117 (-) True G150530
TU204049 other upstream 19162 1238242 ~ 1239990 (-) True G150705
TU204050 other upstream 20345 1239425 ~ 1239990 (-) False G150705
TU204064 other upstream 83575 1302655 ~ 1313347 (-) False LOC120573832
XR_005641991.1 other upstream 237667 1456747 ~ 1460981 (-) True LOC120575422
XR_005641992.1 other upstream 237667 1456747 ~ 1458866 (-) False LOC120575422

Expression Profile