RNA id: TU204471


Basic Information

Item Value
RNA id TU204471
length 961
lncRNA type intronic
GC content 0.48
exon number 2
gene id G151003
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 2005189 ~ 2006310 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gctgcagcccaaaccgtgtcctaagcccctccccctttctgctgcagcccaaaccgtctcctaagcccctccccctttctgctgcagcccaaaccatctcctaagcccctccccctttCTGCAGCCCCAAACCGtgtcctaagcccctccccttttcttgctgcagcccaaaccatctcctaagcccctccccctttctgctgcagcccaaaccgtgtcctaagcccctccccctttctgctgcagcccaaaccgtctcctaagcccctccccacacaagggagtttgacactaggcatgtcagacaacatgttcaataactaaacactaacacaatgttaactttactcaccaacagtaaaacgacgctaactagcaggctaacgttagccatttcagcatcacatcagaccgaccactgtgctaacgttactatcatcctcaccatcGTAGCTTTGAGGACTtctgactactaataaccaagtgaaagataaaccATTcgtggtaattatgttacctgttgagaagaaatgtggctacacctgcatcgttcttcagatctttaaaatcctgaagctcacgccacctctgaaaagcctctccaatattcacccgaATTTTGGGAAACTTTCCTGCAGCTCGTGCACGggagaagggggaggggagaacgctatatatgtgcgtgcatgagcagtgattgacaggcagatagatcccgccccctgtggccctgattggagaaaatcaaccggggaattttgccaatggcactacaggctgtaggtggtgccagaggagctggatttattttatattacataaatcatgtagttctactggaacataaggtcagtttcagcaaatgtgacagaaaggtagttttataagacttacctactgcatctttaagtacTCAGTGGCTGTTAAAAGCTAAAATGTCTCATATATACTCTGTGGCtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204493 lncRNA downstream 3786 2001006 ~ 2001403 (-) False G151006
TU204494 lncRNA downstream 3786 2001006 ~ 2001403 (-) False G151006
TU204495 lncRNA downstream 3786 2001006 ~ 2001403 (-) True G151006
TU204496 lncRNA downstream 3786 2001006 ~ 2001403 (-) False G151006
TU204459 lncRNA downstream 22367 1909416 ~ 1982822 (-) False G150992
TU204498 lncRNA upstream 1756 2008066 ~ 2009261 (-) True G151007
TU204500 lncRNA upstream 2622 2008932 ~ 2072784 (-) True G151008
TU204462 lncRNA upstream 5666 2011976 ~ 2034999 (-) True G150994
TU204474 lncRNA upstream 24680 2030990 ~ 2126236 (-) False G151004
TU204479 lncRNA upstream 24680 2030990 ~ 2126236 (-) False G151004
XM_039823744.1 mRNA downstream 133097 1845740 ~ 1872092 (-) True LOC120573864
XM_039823750.1 mRNA downstream 183061 1816293 ~ 1822128 (-) False LOC120573867
XM_039824602.1 mRNA upstream 126422 2132732 ~ 2161724 (-) True farsa
XM_039823890.1 mRNA upstream 158410 2164720 ~ 2209257 (-) False ilf3b
XM_039823889.1 mRNA upstream 158410 2164720 ~ 2209257 (-) True ilf3b
XM_039823892.1 mRNA upstream 164931 2171241 ~ 2209257 (-) False ilf3b
XM_039823830.1 mRNA upstream 208284 2214594 ~ 2224968 (-) True LOC120573916
XR_005641788.1 other downstream 151088 1853642 ~ 1854101 (-) False LOC120573864
TU204241 other downstream 183343 1818724 ~ 1821846 (-) False LOC120573867
TU204260 other downstream 265708 1724122 ~ 1739481 (-) False G150856
TU204258 other downstream 306108 1658877 ~ 1699081 (-) False LOC120574289
TU204266 other downstream 384718 1608688 ~ 1620471 (-) False LOC120574287
TU204533 other upstream 149286 2155596 ~ 2161722 (-) False farsa
TU204768 other upstream 536119 2542429 ~ 2598982 (-) False G151146
TU204751 other upstream 590492 2596802 ~ 2598982 (-) True G151146
TU204905 other upstream 867608 2873918 ~ 2896343 (-) True G151216
TU204921 other upstream 905016 2911326 ~ 2915367 (-) True G151227

Expression Profile