RNA id: XM_039824602.1


Basic Information

Item Value
RNA id XM_039824602.1
length 1821
RNA type mRNA
GC content 0.54
exon number 13
gene id farsa
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 2132732 ~ 2161724 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCCGGTCTCTTTCGTGCTTCGCAGGGATCGAGCATGGCGGACGCCGGTGTGGCGGAGACGCTCCTACGGCGGATTGAGAAGGCGGACGGCGGTGTGGACAGCCTCGACGTGGCGAGCAGCCTCGGGCTGGACCACCAGGTCGTCGTCGGGGCCGTGAAGAGTCTGCAGGCCCTCGGAGACTTAATCTCAGCCGAGCAGCGCTCCTCCAAACACTGGGAGCTGTCGGAGGAGGGCACGGAGATAGCCGAGCAGGGCAGCCATGAGGCTCGGGTGTTCGGCTCCATCCCGCTGGACGGTCTGGCTCAGAGTGAGCTCATGAAACTGTCCTTTGGGAAGATCGGCTTCAGCAAGGCGATGTCCAACAAGTGGATCAGGCTGGACAAGACGCACGAGGGCGGCCCCAGGATATTCAGGACTGTGGAGAGCATACAGGACCAAGAAAAAAACTGTTTTGGAGTGATTCTTGTGTCTGTGTTCAGGACGGTGAAGTCGTACTGGATCACTAAGGGCCCCTCCTTCAGCACCACCATCACCAAACAGGAGACAGAGCTCACTCCAGACATGATTGCCAATGGCAGCTGGAAAGAGAAGAAGTTTAAGCCGTACAACTTTGAGGCGATGGGCGTGGCCCCAGACTGCGGCCATCTGCACCCGCTGATGAAAGTGCGAACGCAGTTCAGGCAGATCTTCCTCGAGATGGGCTTCTCAGAGATGCCGACCAACAACTTCATCGAGAGCTCTTTCTGGAACTTCGACTCGCTGTTCCAGCCGCAGCAGCACCCGGCCAGAGACGCACACGACACCTTCTTCCTGTCCGACCCAGCTCTCGCCCACGAGTTCCCGCAGGACTACCTGGAGAGAGTGAAGAAGGTCCACTCAGAGGGAGGCTTTGGCTCACAAGGGTACAAATATGACTGGAAGATAGAGGAGGCTCAGAAGAACATCCTCCGCACTCACACTACGGCAGTCAGCGCACGCATGCTGTATAAACTGGCTCAACAGGAGAAGTTCACCCCCGTCAAGTATTTCTCCATCGACCGGGTGTTCAGGAACGAGACGCTGGACGCCACCCACCTGGCCGAGTTCCACCAGATCGAGGGCGTGGTGGCCGACTACGGCCTCACGCTGGGAGACCTGATCGGCATCCTGTACCAGTTCTTCACTAAACTAGGAATTACCAAACTCCGCTTCAAGCCTGCCTACAACCCGTACACCGAGCCCAGCATGGAGGTGTTCAGCTACCACGAAGGACTCCAAAAGTGGGTGGAGGTGGGAAACTCTGGGGTCTTCAGACCAGAGATGCTGCTGCCCATGGGTCTCCCCGAGGACGTGTCTGTGATCGCCTGGGGGCTGTCTCTGGAAAGGCCCACCATGATTAAATACGGCATCAACAACATCCGAGAGCTGGTGGGACACAAAGTCAACCTGCAGATGGTCTACGACAGCCCCATGTGTCGACTGGAGTCCTGAAGTTCACCCACCGTTtatccttattattattattagtattattatttagaATTGGACCCACCTTTCCTTTAGCTGGGACAACTCCTTTCTACGCCTCCCTCTCCTGCTGAGCTCGACCAGTAAAACCAGTTGGAAGGCGACCGATGCAGAAAGACTTGAGACAGACTTCTTCAAAGGGCTTTTACACACAGGAGCAGCCTTTTTATATGAACTTAATATTCCAAAACATCATGCAAATCTTACCTTTGTTACATACTAAGAAGAGTTTGTTGCACCCCGCTACTGCAGGAAATATCTGACTTCTGTTATGTGACAGAGGTTCAATAAAAATGCTTCTTTGTTCCCAAATA

Function

GO:

id name namespace
GO:0006432 phenylalanyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0000049 tRNA binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004826 phenylalanine-tRNA ligase activity molecular_function

KEGG:

id description
K01889 FARSA, pheS; phenylalanyl-tRNA synthetase alpha chain

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204527 lncRNA downstream 3880 2127150 ~ 2128852 (-) True G151026
TU204474 lncRNA downstream 6496 2030990 ~ 2126236 (-) False G151004
TU204479 lncRNA downstream 6496 2030990 ~ 2126236 (-) False G151004
TU204482 lncRNA downstream 6496 2030990 ~ 2126236 (-) False G151004
TU204486 lncRNA downstream 6496 2030990 ~ 2126236 (-) False G151004
TU204534 lncRNA upstream 48795 2210519 ~ 2212318 (-) True G151030
TU204536 lncRNA upstream 51231 2212955 ~ 2214142 (-) True G151031
TU204539 lncRNA upstream 63595 2225319 ~ 2225764 (-) True G151033
TU204540 lncRNA upstream 77423 2239147 ~ 2239811 (-) True G151034
TU204551 lncRNA upstream 108246 2269970 ~ 2270192 (-) True G151044
XM_039825206.1 mRNA downstream 74093 2004876 ~ 2058639 (-) True LOC120574768
XM_039823744.1 mRNA downstream 260640 1845740 ~ 1872092 (-) True LOC120573864
XM_039823750.1 mRNA downstream 310604 1816293 ~ 1822128 (-) False LOC120573867
XM_039823890.1 mRNA upstream 2996 2164720 ~ 2209257 (-) False ilf3b
XM_039823889.1 mRNA upstream 2996 2164720 ~ 2209257 (-) True ilf3b
XM_039823892.1 mRNA upstream 9517 2171241 ~ 2209257 (-) False ilf3b
XM_039823830.1 mRNA upstream 52870 2214594 ~ 2224968 (-) True LOC120573916
XM_039825406.1 mRNA upstream 193718 2355442 ~ 2433220 (-) True si:ch211-194b1.1
XR_005641788.1 other downstream 278631 1853642 ~ 1854101 (-) False LOC120573864
TU204241 other downstream 310886 1818724 ~ 1821846 (-) False LOC120573867
TU204260 other downstream 393251 1724122 ~ 1739481 (-) False G150856
TU204258 other downstream 433651 1658877 ~ 1699081 (-) False LOC120574289
TU204266 other downstream 512261 1608688 ~ 1620471 (-) False LOC120574287
TU204768 other upstream 380705 2542429 ~ 2598982 (-) False G151146
TU204751 other upstream 435078 2596802 ~ 2598982 (-) True G151146
TU204905 other upstream 712194 2873918 ~ 2896343 (-) True G151216
TU204921 other upstream 749602 2911326 ~ 2915367 (-) True G151227
TU205089 other upstream 1150003 3311727 ~ 3316915 (-) True G151344

Expression Profile