RNA id: TU204729


Basic Information

Item Value
RNA id TU204729
length 1324
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G151134
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 2352058 ~ 2353558 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agggtcaagacttggttttaggattagggatagaattaggttatggttaaggtgagggtaagggttaaggttaggcatttagttgtgatggttaaggttagggtaaggggctagggaatgcattatgtcaatgactggtccccacaaagatagtgccacaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacatacatactaaaTGTGCATTTGTTATCCAATTTAAAGCGACAGAAGTAAACCTGCTGATAGGAAGGTGCCTCCTTGGCTCAAAGTGGACTTAATGCGGGAGCCTGTCTGTATGTGGTCTGACCAGGACTGAAATGCATCCGTCATCGTGGTAGGATGTGCCAAAGAGTCTGTTTACTTCCGTGTTTTGCCTCTGTAAAAGCAGTTTACATTGGACCTGATGGAGGAAACTCTGCACCGCGATCGAGTTCCCCCGAGGTTTTTCAAACCGAACAACGGACTACATCAGCGGCGATCTGCATCCACTACATTCACAGCAGAGAAACAAAGACTCTGGGCTACTGTAGCGGCTCCATGGGACTTGTGTTGTTACTGTAGGATTGTTAGATTATTCCAATTAAACATGAACACAAACCAAACTGGATTTGGGCGCAGGGCTCTGGAGATCTGCCAGCCCTCAGtccaaacacagaaacacaggctTCTGAAGTCTGTTTCTTTCTACATTGCTTCAGATTTCGTTTGTATCAACCCCGAACTGAGGCAATAACCTAAAAGGCTCCATGTAGGCGAGCTTTTAAAGTTTGTTCCAGTGTTGCCCATGTTTGAAACATGACTGTTGGATCCAAAAAACGATACCCGGACCCTTTTATGGAGTATAGaaacatattattatataactACATGTACTTAAGAAACTGTTGACGCTAGTAGAGCTATCAGCAGTTCTATTAGCaaggtagttaaaaagaaaaataagtgaTCTTAATTCCTCTATCGTGATTTGATTTCAACCTTTGATGCTAcagtatgtattttttattgctCTGTgcatttctgtatttgcagtCCTGCAAGGTGAATCTTtagagtattttttattttgaatccgttagtctctctctctctccaagcTGAAACTTTTGGTGCTGATGAGAATGTTGCAGGTCGGGAGCCGGCGAGTGACTGAACTGAACGTGAGGAAGGCACTTTATCGGGATTGTCCCGTCCTGGCGTTTTAAAATGACGCTAATCCACGGGCCTTAAAGGGGACCACTGCACGGTGAGATATATCATCATCCTCTCTGTGGTCACAGAGCAACAGATGCAGCACGGAAGCAAATAACAGACGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204734 lncRNA downstream 1042 2350000 ~ 2351016 (-) True G151139
TU204566 lncRNA downstream 44805 2306901 ~ 2307253 (-) True G151053
TU204554 lncRNA downstream 65198 2286435 ~ 2286860 (-) True G151047
TU204551 lncRNA downstream 81866 2269970 ~ 2270192 (-) True G151044
TU204540 lncRNA downstream 112247 2239147 ~ 2239811 (-) True G151034
TU204742 lncRNA upstream 13912 2367470 ~ 2368317 (-) True G151141
TU204743 lncRNA upstream 13912 2367470 ~ 2368317 (-) False G151141
TU204759 lncRNA upstream 46251 2399809 ~ 2643750 (-) False G151146
TU204760 lncRNA upstream 46251 2399809 ~ 2598188 (-) False G151146
TU204783 lncRNA upstream 65867 2419425 ~ 2419709 (-) True G151153
XM_039823830.1 mRNA downstream 127090 2214594 ~ 2224968 (-) True LOC120573916
XM_039823890.1 mRNA downstream 142801 2164720 ~ 2209257 (-) False ilf3b
XM_039823889.1 mRNA downstream 142801 2164720 ~ 2209257 (-) True ilf3b
XM_039823892.1 mRNA downstream 142801 2171241 ~ 2209257 (-) False ilf3b
XM_039824602.1 mRNA downstream 190334 2132732 ~ 2161724 (-) True farsa
XM_039825406.1 mRNA upstream 1884 2355442 ~ 2433220 (-) True si:ch211-194b1.1
XM_039823842.1 mRNA upstream 84544 2438102 ~ 2450469 (-) True pglyrp6
XM_039824144.1 mRNA upstream 384377 2737935 ~ 2750253 (-) True LOC120574080
XM_039824003.1 mRNA upstream 447824 2801382 ~ 2820321 (-) True si:ch211-106h11.3
XM_039824004.1 mRNA upstream 486875 2840433 ~ 2842813 (-) True LOC120574018
TU204533 other downstream 190336 2155596 ~ 2161722 (-) False farsa
XR_005641788.1 other downstream 497957 1853642 ~ 1854101 (-) False LOC120573864
TU204241 other downstream 530212 1818724 ~ 1821846 (-) False LOC120573867
TU204260 other downstream 612577 1724122 ~ 1739481 (-) False G150856
TU204258 other downstream 652977 1658877 ~ 1699081 (-) False LOC120574289
TU204768 other upstream 188871 2542429 ~ 2598982 (-) False G151146
TU204751 other upstream 243244 2596802 ~ 2598982 (-) True G151146
TU204905 other upstream 520360 2873918 ~ 2896343 (-) True G151216
TU204921 other upstream 557768 2911326 ~ 2915367 (-) True G151227
TU205089 other upstream 958169 3311727 ~ 3316915 (-) True G151344

Expression Profile