RNA id: TU204734


Basic Information

Item Value
RNA id TU204734
length 993
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G151139
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 2350000 ~ 2351016 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTTGTCTCTTGTTTGCTCCCATAATGCTGTAGCCTCTTCcaggtctgtgtctgtgtgaccgTGTGAGATGCAGGCCGGTGCattaggccggctacacactggctgcgtggcgtgtccgtttttatttcagctCCCATGGTAACcggttagagcgtgcacactgcctgcgtgacgcgcacgtctcaggcgcggatCGAGCCACACCGAAAacacgtgcatgctagaaacaggaccgacgcctatggaagcatttccaggcaacctagaataggaaaagatgtttatatgtcattttgacacgaatacatttaataaatgacatgttgatgtttgaaagtctcgaggttttgacataaatgcagatatataaatgtaagtaATACATGTCAactgtcaatccagaaggaaatattctggagcctatgttgccgtcaatactgccgacgttgtctttgctgtaatcagatcagaatatatttatgtttatgggaaacatccatgtgtccagacaaggctagcagcagcagcatcagcagcagcagcgccgcgtcagacacctttctggtcgtgtaaagacgtagaaaacgccacgcagccgccacgcaactgaaACGCCACGCGCAGCCAGTGTGTGGCCGGCCTTACACTTCCCTTTAAGATCACCTGAAGAAGCCTCAGCTGGTGTAacccgctttttttttttttttttttttttttttgtgtgtgtgtgtgtgttgtactgtgtgtgtgtgtgtgtgtgtgtgtgtaaataaaaaaagagaccaTGATGATGATAGTTgataaacaagaaaaaaggaaagaaccGTACTGTACACACAAAAGGGTTAAGTTTTTAAGTGACGCAACTccagaaagaaacaataaatgtgatttaaatTTCAGACCCTGAACCGTCTCCTTTATTGTAACATCACAGCACGTCAGCAGTGCGAACTCTTCAGTTGCTATGGTTTTCAGCCACTAGAGGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204566 lncRNA downstream 42747 2306901 ~ 2307253 (-) True G151053
TU204554 lncRNA downstream 63140 2286435 ~ 2286860 (-) True G151047
TU204551 lncRNA downstream 79808 2269970 ~ 2270192 (-) True G151044
TU204540 lncRNA downstream 110189 2239147 ~ 2239811 (-) True G151034
TU204539 lncRNA downstream 124236 2225319 ~ 2225764 (-) True G151033
TU204729 lncRNA upstream 1042 2352058 ~ 2353558 (-) True G151134
TU204742 lncRNA upstream 16454 2367470 ~ 2368317 (-) True G151141
TU204743 lncRNA upstream 16454 2367470 ~ 2368317 (-) False G151141
TU204759 lncRNA upstream 48793 2399809 ~ 2643750 (-) False G151146
TU204760 lncRNA upstream 48793 2399809 ~ 2598188 (-) False G151146
XM_039823830.1 mRNA downstream 125032 2214594 ~ 2224968 (-) True LOC120573916
XM_039823890.1 mRNA downstream 140743 2164720 ~ 2209257 (-) False ilf3b
XM_039823889.1 mRNA downstream 140743 2164720 ~ 2209257 (-) True ilf3b
XM_039823892.1 mRNA downstream 140743 2171241 ~ 2209257 (-) False ilf3b
XM_039824602.1 mRNA downstream 188276 2132732 ~ 2161724 (-) True farsa
XM_039825406.1 mRNA upstream 4426 2355442 ~ 2433220 (-) True si:ch211-194b1.1
XM_039823842.1 mRNA upstream 87086 2438102 ~ 2450469 (-) True pglyrp6
XM_039824144.1 mRNA upstream 386919 2737935 ~ 2750253 (-) True LOC120574080
XM_039824003.1 mRNA upstream 450366 2801382 ~ 2820321 (-) True si:ch211-106h11.3
XM_039824004.1 mRNA upstream 489417 2840433 ~ 2842813 (-) True LOC120574018
TU204533 other downstream 188278 2155596 ~ 2161722 (-) False farsa
XR_005641788.1 other downstream 495899 1853642 ~ 1854101 (-) False LOC120573864
TU204241 other downstream 528154 1818724 ~ 1821846 (-) False LOC120573867
TU204260 other downstream 610519 1724122 ~ 1739481 (-) False G150856
TU204258 other downstream 650919 1658877 ~ 1699081 (-) False LOC120574289
TU204768 other upstream 191413 2542429 ~ 2598982 (-) False G151146
TU204751 other upstream 245786 2596802 ~ 2598982 (-) True G151146
TU204905 other upstream 522902 2873918 ~ 2896343 (-) True G151216
TU204921 other upstream 560310 2911326 ~ 2915367 (-) True G151227
TU205089 other upstream 960711 3311727 ~ 3316915 (-) True G151344

Expression Profile