RNA id: TU204767


Basic Information

Item Value
RNA id TU204767
length 1067
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id G151146
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 2399809 ~ 2805411 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGGAGCAGTGATTGGTTTCCACACGACACCACAAAAGGTCGGCATGGAcaacattaacattcacaaaccaaaatattaacaatggaaacaCTCAAAATTGGTTTTATATGAAACTTAACGGCAAAGTTACACAAAAATATCAACGTAGAGGAACTCGAGGCACTGTAGACTATTATGAAAACAACGTAGGTGCACATATGGTCGACTCTAAAGGCTCTGAcgcaccaaccagacggccaatcagacggcagtaaagccagtcgggctgatcggtctccccgagttggtccagaaagttcctcagaactcaccgaagagacgagacctgATCTGTGACGtcgccccaaaaaatgaaaaccagcagctgattggacgaacgcgtcacatgggtttgttttcttcgggaaattcaaagccagactgtcatggcggctcgttcagaatacgatctcatatcggactaaaatagttcaccgaaaaaacgtgtttctggaaacatctgaagagagaaataggctgtgtgtctctctgtgtgtgtgtgtctctgtgtgtgtgtgtctctgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtctgtgtgtgtgtgtctctatgtgtgtctctgtgtgtctctctgtgtgtgtgtgtgtcactgtgtgtgtgtgtgtgtgtctctgtgtgtgtctctctgtgtctgtctctgcgtgtctctctgtgtgtgtgtgtgtctgtctctgtgtgtctctctgtgtgtgtctctgtgtgtatctctgtgtgtgtctctgtgtgtgtctgtctctgtgtctgtctctgtgtgtgtgtgtctctgtgtgtctgtctctgtgactctgtgtgtgtgtgtctgtctctctgtgtgtgtctgtgtgtgtgtctctgtgtgtgtgtgtgtctctgtgtgtgtctctgtgtgtctctctgtgtgtgtgtgtgtcactgtgtctgtgtgtgtgtctgtgtgtgtgtctgtgtgtttgtgtgtctgtctgtgtgtgtgtatgtgtctgtctgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204820 lncRNA downstream 23271 2516737 ~ 2517016 (-) True G151177
TU204774 lncRNA downstream 39297 2441224 ~ 2500990 (-) True G151147
TU204811 lncRNA downstream 50096 2475159 ~ 2490191 (-) True G151169
TU204779 lncRNA downstream 52654 2472410 ~ 2487633 (-) True G151149
TU204783 lncRNA downstream 120578 2419425 ~ 2419709 (-) True G151153
TU204845 lncRNA upstream 38792 2637774 ~ 2929497 (-) False G151194
TU204854 lncRNA upstream 77615 2676597 ~ 2677069 (-) True G151200
TU204861 lncRNA upstream 116687 2715669 ~ 2716220 (-) True G151203
TU204863 lncRNA upstream 116687 2715669 ~ 2716220 (-) False G151203
TU204894 lncRNA upstream 145514 2744496 ~ 2745709 (-) True G151210
XM_039823842.1 mRNA downstream 89818 2438102 ~ 2450469 (-) True pglyrp6
XM_039825406.1 mRNA downstream 107067 2355442 ~ 2433220 (-) True si:ch211-194b1.1
XM_039823830.1 mRNA downstream 315319 2214594 ~ 2224968 (-) True LOC120573916
XM_039823889.1 mRNA downstream 331030 2164720 ~ 2209257 (-) True ilf3b
XM_039824144.1 mRNA upstream 138953 2737935 ~ 2750253 (-) True LOC120574080
XM_039824003.1 mRNA upstream 202400 2801382 ~ 2820321 (-) True si:ch211-106h11.3
XM_039824004.1 mRNA upstream 241451 2840433 ~ 2842813 (-) True LOC120574018
XM_039824168.1 mRNA upstream 400668 2999650 ~ 3003392 (-) True trir
XM_039824169.1 mRNA upstream 400668 2999650 ~ 3003391 (-) False trir
TU204533 other downstream 378565 2155596 ~ 2161722 (-) False farsa
XR_005641788.1 other downstream 686186 1853642 ~ 1854101 (-) False LOC120573864
TU204241 other downstream 718441 1818724 ~ 1821846 (-) False LOC120573867
TU204260 other downstream 800806 1724122 ~ 1739481 (-) False G150856
TU204258 other downstream 841206 1658877 ~ 1699081 (-) False LOC120574289
TU204905 other upstream 274936 2873918 ~ 2896343 (-) True G151216
TU204921 other upstream 312344 2911326 ~ 2915367 (-) True G151227
TU205089 other upstream 712745 3311727 ~ 3316915 (-) True G151344
unassigned_transcript_716 other upstream 1431197 4030179 ~ 4030260 (-) True trnas-aga_11
TU205621 other upstream 1762866 4361848 ~ 4367333 (-) False LOC120575464

Expression Profile