RNA id: TU204774


Basic Information

Item Value
RNA id TU204774
length 3123
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G151147
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 2441224 ~ 2500990 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacttttccctttatttcccTTAATACAAAAAGTCCCTTCTACACATAAACtgagaaactcccttttagctAATCCTTCTCTTGTCTTCTCAGAACAAGGTGCAAAATAATCAAGACATGCATACACAAAATATATGAGGAAACAACTGTAAAACAAACCGTTCAAAGTGGCATTAAAAGAACATTAACAGATGCTTTACATTACAGTACTTTGCTCCCATGTGTTACACATCATTTAAAATCAAACAAAGCTGTACATCAGTATCATtatgtgcaaaactgtaaaaaaaacaaccagtacagtccagttcagaccaaagattagcgacagttgtctttcaaattccctctgcaccaataggatagcgctccaaccaatcagagcaacgctagttgatagattaaactttaaactccgaacacatcttccttttttaagaatgacttcagagccgttctttgttcttttctcaaagaaaagctgaactccaagtcttccagagtctcGGCCAAAAGCCATTTCCAGAAGATCGCCAGCatcagcagccataagccccgcccactgactctatacacgatgtgattggcccgactagagtttggtttttccagctcgcaagccaacgcagagttgctagactgaccctatCAGTGGTCTAGACCCTctagggtggtctagatttctaggctagctgacttctctattgactgtctcttacgttctaaaaccagcctctggagactggacCAGCTGAGTCACAGCGaaaccatcagctggtttgagtcgagctgagacggacCGAGCCGTTCTAAAACGGTTTCGTCTCGGCGCGAAACTTTGGTCTGAACTGCGCTTAAAAGTAAACATGTCACGACTGTAAACAATATTTAAGTTAGCATATCAGTGGACAGTAAAAATGTACCCTTTAGTCCCGAAACATTTTGTGCAGCGAGCATCATTCTTCCTTTGAACAGTAAGTGGCCTTTATGGCATTACTGCTGGTTTGCAGAGATGCCCTGGCTCGTTCATAgataataacacaaaaaaaagagctgTTACCCTTTCACACATGGCTTCAGAGTCCGACAAAGTTAACAGAAAATACTGACAACTGTCTAAGCTGCCAAAGTGAAAGTCCCTTCTACACACAAACTGAGAACAAGGTTAAAAAATAATCAAGACACgcatacacaaatatatatgaGGAAACAACTGTAAAACAAACCCTTTCAAAGTGGCATTAAAAGAACATTAAGAGATGTTTTCCTTACAGTACTTTACAGCCACTACAGATTTGGTCAAAATTATAGTCttgcattgtcagaccttcctctacagcgctgcggaggaaggtctggctagtccatacagcattctgggatgggagaaaaacgtgctctggtttattggcatttctttaaaccaatcacaatcatcgtgggccggggctaagctctggacggagccacggtgcctctgctaaatagtctcaggaaggagctggttttggtggaacatgtggacgttcagaagtagttttagtcatgcaacagagaactcagattggacagatagtctagctagctgttagacagacagacagacagatagtctagctagctgtctggatttaccctgcagagatctgaggagcagtttaaGGACATatctggcgcaaaatgaccctaggggttattaacagATGTGTAgccactctgtcgttctctgggacatgttttcatgctaatcgaatgtgtttgtagcttgaaagaagctagcgcggaccgctgattagcttacaacactagtattcggggcacagggaaagtaaaaacaaaatcgctatttataccactagaaaggctcaaaatatcaccacacttccacggtagcataatgagggtccctacatgtaaaccgaagcattgagaacattgtaagtgtacagacggtttattattaaaaagatagattataaagacagcgTTAGCGTTCTCGTATACATGCAGCCGCCGTCTTGGGAGCTcgagactcgagtcaccgacctcgccggactgtccaacggccgataatcgggttggcgCGTCAGCGCCTTAACACAGTTTGGCTGAGAACCTTAAACCGTCTTTTCTCAGCTTCAATGCACAAAAGAGCAGCGCTTTGACATTGTGTTAAACCGGATTTTCTGtagaaatattattattatatatcgtAGCTTTGCACGGAGCACTTTAAACCAAACCAAGTAAAGAGTCTTTGTCTTGCAGCGCATTAGTCGCCTTGCTCTCTACTGCACAAACAGTTCATACATATTGATGACTAACCGGTTGGCTGCAGGGCTCGTCCTACCGCCTAACTCcctatctccctccctccctccctccctccctccctccagccGCAGGAGGCCACGAACAAAAGCAAAGGATGAGAATGGGAGCGAAGGAACAGCCTTGACTGAAACCTGGAAGCTAATGCATAAACAATACGCACAGCGAGCTGTCTCTCGTGTACGGAAGAGGATTTGGGCCACATgggaaaaaatgtatttgagctctgagtcagaattctgactttaatctgaGAATAAAGTAAATTATACGACTTTTAAACAAAATCTAAATTAagtgactttaatctcagaattctgactttttctcaAAATAACTTTCTTTCTAAAAACCTAAAATTCAGAGATTTGAGTAAGAATTCTGtcttaaactcagaactcaactGACAtttggccctaatcctcttccgtacttGTGTCTATTCTGCCTCTGATATACACATGTTTACATACTCAAATCCTGTTGGACAAGGCTATAATAGTTTAGAATTTttaactagttttttttttactttttttcaattttactTTAGTTAGAGTGGGTTTGCTacttttagtttagtttcagttttgCAGAAAGgtttaattttagtttttcgGGCCCGAGCATCGGGGGGCGAAGGCCCTTATTGTAATAGataggattattattattatattatatcaatattattCTGAAAAGCAAGGAATTAAGTTTGGgttcaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtctgtgtgtgtctgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204783 lncRNA downstream 21515 2419425 ~ 2419709 (-) True G151153
TU204742 lncRNA downstream 72907 2367470 ~ 2368317 (-) True G151141
TU204743 lncRNA downstream 72907 2367470 ~ 2368317 (-) False G151141
TU204729 lncRNA downstream 87666 2352058 ~ 2353558 (-) True G151134
TU204734 lncRNA downstream 90208 2350000 ~ 2351016 (-) True G151139
TU204820 lncRNA upstream 15747 2516737 ~ 2517016 (-) True G151177
TU204755 lncRNA upstream 39297 2540287 ~ 2598982 (-) False G151146
TU204761 lncRNA upstream 39297 2540287 ~ 2598982 (-) False G151146
TU204767 lncRNA upstream 39297 2540287 ~ 2598982 (-) False G151146
TU204822 lncRNA upstream 46725 2547715 ~ 2567603 (-) True G151179
XM_039825406.1 mRNA downstream 8004 2355442 ~ 2433220 (-) True si:ch211-194b1.1
XM_039823830.1 mRNA downstream 216256 2214594 ~ 2224968 (-) True LOC120573916
XM_039823890.1 mRNA downstream 231967 2164720 ~ 2209257 (-) False ilf3b
XM_039824144.1 mRNA upstream 236945 2737935 ~ 2750253 (-) True LOC120574080
XM_039824003.1 mRNA upstream 300392 2801382 ~ 2820321 (-) True si:ch211-106h11.3
XM_039824004.1 mRNA upstream 339443 2840433 ~ 2842813 (-) True LOC120574018
XM_039824168.1 mRNA upstream 498660 2999650 ~ 3003392 (-) True trir
XM_039824169.1 mRNA upstream 498660 2999650 ~ 3003391 (-) False trir
TU204533 other downstream 279502 2155596 ~ 2161722 (-) False farsa
XR_005641788.1 other downstream 587123 1853642 ~ 1854101 (-) False LOC120573864
TU204241 other downstream 619378 1818724 ~ 1821846 (-) False LOC120573867
TU204260 other downstream 701743 1724122 ~ 1739481 (-) False G150856
TU204258 other downstream 742143 1658877 ~ 1699081 (-) False LOC120574289
TU204768 other upstream 41439 2542429 ~ 2598982 (-) False G151146
TU204751 other upstream 95812 2596802 ~ 2598982 (-) True G151146
TU204905 other upstream 372928 2873918 ~ 2896343 (-) True G151216
TU204921 other upstream 410336 2911326 ~ 2915367 (-) True G151227
TU205089 other upstream 810737 3311727 ~ 3316915 (-) True G151344

Expression Profile