RNA id: TU204845



Basic Information


Item Value
RNA id TU204845
length 1211
lncRNA type read_through
GC content 0.47
exon number 2
gene id G151194
representative False

Chromosome Information


Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 2637774 ~ 2929497 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ggacaacaggagggttaataaATAAGACCCTCTGAAAATAAAGACGAGTATGAGACCCTGATAAAGACACAAGTAGACAACGTGTAGCAGTTTAGAAAGCCTCTTTAATTATTGATACCAACATTTCACAACATGATTTCCACTCCAGAGGTGCAGACAGAAACATTACACAAGAATTGAGGAGATGCAGTTTCTTTTGGGGATTTCCTTTGCTTCTTAAGTGCGAAACAGCGACACGTTAAATCTGTGAGCTGTTATTCTTAACAACACATTCCTCTCACTTCCCAGCAGTGTGAGCCGTAAGCAGCCCCCAGAGCAGCCTGCGAGCGGTTTTCCAGCGTCCCGACACAAAGAGCGTGTATCTCTAAAAGAAGTGTCCAGCTGATAGGTGTGGTCACATGTCGACTCGGCTCTATACGAAGCCCTTGGAGCCAGAGAAAGGGAAGAAGCCCACTCAACAAGTCGTGCTCGGAGAATACAGTGTGTGCAGTGAGTAATAGAGAGACTACCCTGCCACCCAGTTTCAACTTTATCTtgaacataaacaaaaaaacaatgaaaagtgatgaatgtaaataatcaatgcacatcccaaaaaaaaaaaagccaaccaACCCTGCCCGGTAGAACTCAGCTGCGTTTAAGGCCGCCTtgaggcgctgacacaccaacctgattatcggccgtcggacagtctggcgaggtcggtgactcgagtctgttcggtgcgttttatttgggccgatttgacttgttgaaatcGGTGGGTGGGcggtcggactcaatgaccaattactggaaatggcgagcgggatgagcgtgactagagtctctcaaaatctgatgaaaatcttttaaacggacctttgttgatctgaaatgaaagattcaggagctgcacggcctatttctctcttaaaatgtttgcaGAAACACTGttttagtaaaatatgagatcagaTTCGTAACGAGACGCCATGATGGTTGgatttgaaattcgggagcagccagacccatgtgacgcgttcgtccaatcagctgccggttttcattttttgggcgacaatacagagtagcgccgcctgctgctatggagacgtatcaGgtctcgtctcttcggtgtgttctgaggaactttctggaccaactcggggagactgatcagcccgactggctttactgccgtctgattggccgtctggttggtgtgt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU204755 lncRNA downstream 38792 2540287 ~ 2598982 (-) False G151146
TU204761 lncRNA downstream 38792 2540287 ~ 2598982 (-) False G151146
TU204767 lncRNA downstream 38792 2540287 ~ 2598982 (-) False G151146
TU204760 lncRNA downstream 39586 2399809 ~ 2598188 (-) False G151146
TU204756 lncRNA downstream 39586 2440998 ~ 2598188 (-) False G151146
TU204849 lncRNA upstream 12784 2942281 ~ 2944617 (-) True G151195
TU204964 lncRNA upstream 19588 2949085 ~ 2949619 (-) True G151261
TU204978 lncRNA upstream 40457 2969954 ~ 2970309 (-) True G151275
TU204986 lncRNA upstream 56596 2986093 ~ 2986852 (-) True G151282
TU204990 lncRNA upstream 110482 3039979 ~ 3040406 (-) True G151286
XM_039823842.1 mRNA downstream 187305 2438102 ~ 2450469 (-) True pglyrp6
XM_039825406.1 mRNA downstream 204554 2355442 ~ 2433220 (-) True si:ch211-194b1.1
XM_039823830.1 mRNA downstream 412806 2214594 ~ 2224968 (-) True LOC120573916
XM_039823889.1 mRNA downstream 428517 2164720 ~ 2209257 (-) True ilf3b
XM_039824168.1 mRNA upstream 70153 2999650 ~ 3003392 (-) True trir
XM_039824169.1 mRNA upstream 70153 2999650 ~ 3003391 (-) False trir
XM_039824171.1 mRNA upstream 78592 3008089 ~ 3035012 (-) False hook2
XM_039824170.1 mRNA upstream 78592 3008089 ~ 3035011 (-) True hook2
XM_039825164.1 mRNA upstream 191188 3120685 ~ 3141710 (-) True rtbdn
TU204768 other downstream 38792 2542429 ~ 2598982 (-) False G151146
TU204751 other downstream 38792 2596802 ~ 2598982 (-) True G151146
TU204533 other downstream 476052 2155596 ~ 2161722 (-) False farsa
XR_005641788.1 other downstream 783673 1853642 ~ 1854101 (-) False LOC120573864
TU204241 other downstream 815928 1818724 ~ 1821846 (-) False LOC120573867
TU205089 other upstream 382230 3311727 ~ 3316915 (-) True G151344
unassigned_transcript_716 other upstream 1100682 4030179 ~ 4030260 (-) True trnas-aga_11
TU205621 other upstream 1432351 4361848 ~ 4367333 (-) False LOC120575464
TU205622 other upstream 1432351 4361848 ~ 4367333 (-) True LOC120575464
TU205631 other upstream 1486680 4416177 ~ 4428301 (-) False LOC120575466

Expression Profile