RNA id: TU205089


Basic Information

Item Value
RNA id TU205089
length 931
RNA type TUCP
GC content 0.60
exon number 4
gene id G151344
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 3311727 ~ 3316915 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCTTATATTTGATGACGGCGTCGACgatcttcttcatcttcttagTGAGGGACAGAGGGTTGGGAGAGAGCTTCTCGGCGGGCGGGCGGCCGCGTTTCTTCGCCTTCTTCACCTCCTCGTCCTTGTCCCGCCCGCGGCCGCTGCTGGAGCTGGGCGTGGCCGGCCCGCCGTCGTGGTCGCGGTCTCTCTTGCGCTTTCTGGTCGTCTTTTTGTGACGCACTTCCTCCTCGATGTCCTCTAGATTTCCCTCCTCTATGGCCTTGAGCCACTGTTTCTCAGTGAGCGAGTCGCTGTAGTCCACTTCCTTGCGTTGGCGCGATCCGCGGCCAAacatcttctcctcctcctcttcgcaAGTTAGCCGCTCGACCTCGGCGTCGTCTTTCAGAATCCAGCTGGGCATGTCGTCCTCCTCCATCAGACGCGGTTTCCTCTTAGGGTTGCGGGCGTCCTCGCGGCGCCTGTCCAGATCCATGCGCATGAACTGTTCAAACTCCTCTTCACTTCTGGCTATCATCTGATTGACCGTCTCGTCATCGGGCACTTCGTCTTCCTCCCACGCCCCCCTAGTACGACAGCCTCCTCGAGCCCCGACCTCGTCCTGTTCCTCGTGCTCCAGGATGGCCTGCAAGAAGGCCCGACGCTCGCAGCCGGACGACTTCTGGTCGAACATGCCCGCCTGGATGACCTTCTGGTCCACGTTCAGTTTGTACTTGGCTGCCGCCAGGATCTTCTCCTCCACGCTGTTGACGGTGCAGAGGCGCAGCACGCGCACCTCGTTCTGCTGCCCGATGCGGTGGGCTCGGTCCTGGGCCTGCAGGTCCTGGAGGAGCACAAACACGCGGGTTAGGTCAAGTGGATGGAGCGGTTGTGGttctgactccaccagatggattgcttaCTTCACGGCTTTTGACGCGTGAGTGGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205092 lncRNA downstream 49844 3253008 ~ 3261883 (-) True G151347
TU205078 lncRNA downstream 104687 3206511 ~ 3207040 (-) False G151337
TU205079 lncRNA downstream 104687 3206511 ~ 3207040 (-) True G151337
TU205081 lncRNA downstream 104687 3206511 ~ 3207040 (-) False G151337
TU205032 lncRNA downstream 164103 3146450 ~ 3147624 (-) True G151316
TU205122 lncRNA upstream 1189 3318104 ~ 3321853 (-) True G151374
TU205123 lncRNA upstream 5278 3322193 ~ 3322479 (-) True G151375
TU205124 lncRNA upstream 10229 3327144 ~ 3327367 (-) True G151376
TU205149 lncRNA upstream 58964 3375879 ~ 3380665 (-) True G151399
TU205148 lncRNA upstream 62271 3379186 ~ 3379538 (-) True G151398
XM_039825164.1 mRNA downstream 170017 3120685 ~ 3141710 (-) True rtbdn
XM_039824171.1 mRNA downstream 276715 3008089 ~ 3035012 (-) False hook2
XM_039824170.1 mRNA downstream 276716 3008089 ~ 3035011 (-) True hook2
XM_039824168.1 mRNA downstream 308335 2999650 ~ 3003392 (-) True trir
XM_039824169.1 mRNA downstream 308336 2999650 ~ 3003391 (-) False trir
XM_039826331.1 mRNA upstream 86085 3403000 ~ 3407242 (-) True s1pr5a
XM_039823719.1 mRNA upstream 201009 3517924 ~ 3527374 (-) True si:dkeyp-69e1.8
XM_039826125.1 mRNA upstream 212551 3529466 ~ 3541172 (-) False hmgxb4a
XM_039826126.1 mRNA upstream 212551 3529466 ~ 3541050 (-) True hmgxb4a
XM_039824414.1 mRNA upstream 226109 3543024 ~ 3549032 (-) True ankrd54
TU204921 other downstream 396360 2911326 ~ 2915367 (-) True G151227
TU204905 other downstream 415384 2873918 ~ 2896343 (-) True G151216
TU204768 other downstream 712745 2542429 ~ 2598982 (-) False G151146
TU204751 other downstream 712745 2596802 ~ 2598982 (-) True G151146
TU204533 other downstream 1150005 2155596 ~ 2161722 (-) False farsa
unassigned_transcript_716 other upstream 713264 4030179 ~ 4030260 (-) True trnas-aga_11
TU205621 other upstream 1044933 4361848 ~ 4367333 (-) False LOC120575464
TU205622 other upstream 1044933 4361848 ~ 4367333 (-) True LOC120575464
TU205631 other upstream 1099262 4416177 ~ 4428301 (-) False LOC120575466
XR_005641996.1 other upstream 1101811 4418726 ~ 4464991 (-) False LOC120575466

Expression Profile