RNA id: TU205520



Basic Information


Item Value
RNA id TU205520
length 267
lncRNA type intronic
GC content 0.51
exon number 2
gene id G151691
representative True

Chromosome Information


Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 4268330 ~ 4268654 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


acatctcacttctgttccatctttgttgggagtcgcacatgctcagtagctaggtaaggactactagccagtcagaagcagagtatgagggtgtgccctgacagtacctaggtaaggactactagccagtcagaagcagagtatgagagcgtgccctgacagtacctaggtaaggactactagccagtcagaagcagagtatgagggcgtgccctgacagtacctaggtaaggactactagccagtcagaagcagagtatgagggtg

Function


GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko04979 Cholesterol metabolism

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU205459 lncRNA downstream 102832 4130804 ~ 4165498 (-) True G151639
TU205425 lncRNA downstream 156141 4055214 ~ 4112189 (-) True G151615
TU205452 lncRNA downstream 184649 4082918 ~ 4083681 (-) True G151633
TU205351 lncRNA downstream 303919 3964048 ~ 3964411 (-) True G151561
TU205300 lncRNA downstream 617063 3609156 ~ 3651267 (-) True G151521
XR_005641833.1 lncRNA upstream 65618 4334272 ~ 4337224 (-) True LOC120574176
TU205640 lncRNA upstream 142862 4411516 ~ 4413160 (-) False G151783
TU205642 lncRNA upstream 142862 4411516 ~ 4413160 (-) False G151783
TU205643 lncRNA upstream 142862 4411516 ~ 4413160 (-) True G151783
TU205629 lncRNA upstream 155858 4424512 ~ 4433861 (-) True LOC120575466
XM_039823638.1 mRNA downstream 54235 4211146 ~ 4214095 (-) True LOC120573799
XM_039825575.1 mRNA downstream 295932 3969793 ~ 3972398 (-) True mchr1b
XM_039826288.1 mRNA downstream 553103 3691446 ~ 3715227 (-) False LOC120575475
XM_039826259.1 mRNA upstream 37182 4305836 ~ 4314336 (-) True ddx47
XM_039824373.1 mRNA upstream 46140 4314794 ~ 4324641 (-) True LOC120574171
XM_039823818.1 mRNA upstream 79318 4347972 ~ 4351094 (-) True LOC120573904
XM_039825390.1 mRNA upstream 87031 4355685 ~ 4358977 (-) True LOC120574889
XM_039826264.1 mRNA upstream 95834 4364488 ~ 4367343 (-) False LOC120575464
unassigned_transcript_716 other downstream 238070 4030179 ~ 4030260 (-) True trnas-aga_11
TU205089 other downstream 951415 3311727 ~ 3316915 (-) True G151344
TU204921 other downstream 1352963 2911326 ~ 2915367 (-) True G151227
TU204905 other downstream 1371987 2873918 ~ 2896343 (-) True G151216
TU204751 other downstream 1669348 2596802 ~ 2598982 (-) True G151146
TU205621 other upstream 93194 4361848 ~ 4367333 (-) False LOC120575464
TU205622 other upstream 93194 4361848 ~ 4367333 (-) True LOC120575464
TU205631 other upstream 147523 4416177 ~ 4428301 (-) False LOC120575466
XR_005641996.1 other upstream 150072 4418726 ~ 4464991 (-) False LOC120575466
XR_005641995.1 other upstream 150314 4418968 ~ 4464991 (-) False LOC120575466

Expression Profile