RNA id: XM_039826263.1



Basic Information


Item Value
RNA id XM_039826263.1
length 915
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC120575464
representative False

Chromosome Information


Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 4361848 ~ 4367343 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GCTGTGAGGAATTAGGAAATATTCCTCGGgagaaaatacacacagagagatattCCCAAGACTTCTCACTCCATAATTATCTTTCACGCAGACAGGCAGATAAACAAGCCCCAGGATGAGGAGCCTCCTTCAGTGTCTGGCACTCTGTGCTGCGGTTTCTTTCTGCGTCTGCTATGATTCTAATGAAAGCACAGAATCTGAAGAAGATCTGTTTGTGCCTCCAAACCAAGCCAACTCGTTCATCTCGCCACAGAGGGGAAACGTATACAACCCGCCCAGAGGGAATGGCTACAACCATTACAACTTCATGAGGAAGAAAAAGTCTCCAGCGGAGAGGCAAGCGGAGACTTGTGAGGACTACTCTCCGTGTCGCAACTACGCCTATCGCCACGGCACCCAGCAGGCCTACCAGAGATACTTTGGCTCCCGAGATCAACCCCAGAGACCGGCTGTGACTCGCCGGTACTAAACAGAAAATGATCTGTCAGTCAAATGCAGAATCATCATTATTGTCTGGGAATGAATGCCCGTTCTTTCACTCCACATATCACaactttttatataatttatgtggttggttttgtggcttCTTCTGGATGTGAAATGAATCCGAGgagaaaacactttttttttatgaacacaGAGGCATCCTTTGTGCCTCCCAACCCATCATTACATACAAATTCATGGCTCATTTCTTGTGTAATCTCAGGATAACTTTTATCCACTATTATCAAACCTTCGCAGCATTTGTGAGCTTCATGTGATATGCACGAATAAAGTGTTTTGCTCACTATCCACTAACCGTTTCTTACAGTATCCACCTATTTATCCAGGCCAGCACTGCTGTcagtgattattttcattgcttttaaaaaaaatgaataaaattccCTTTTTTGGGGTTTGTCTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005641833.1 lncRNA downstream 27264 4334272 ~ 4337224 (-) True LOC120574176
TU205520 lncRNA downstream 95834 4268330 ~ 4268654 (-) True G151691
TU205521 lncRNA downstream 95834 4268330 ~ 4268654 (-) False G151691
TU205459 lncRNA downstream 198990 4130804 ~ 4165498 (-) True G151639
TU205452 lncRNA downstream 280807 4082918 ~ 4083681 (-) True G151633
TU205640 lncRNA upstream 44195 4411516 ~ 4413160 (-) False G151783
TU205642 lncRNA upstream 44195 4411516 ~ 4413160 (-) False G151783
TU205643 lncRNA upstream 44195 4411516 ~ 4413160 (-) True G151783
TU205629 lncRNA upstream 57191 4424512 ~ 4433861 (-) True LOC120575466
TU205645 lncRNA upstream 110063 4477384 ~ 4478879 (-) True G151785
XM_039825390.1 mRNA downstream 5511 4355685 ~ 4358977 (-) True LOC120574889
XM_039823818.1 mRNA downstream 13394 4347972 ~ 4351094 (-) True LOC120573904
XM_039824373.1 mRNA downstream 39847 4314794 ~ 4324641 (-) True LOC120574171
XM_039826259.1 mRNA downstream 50152 4305836 ~ 4314336 (-) True ddx47
XM_039824651.1 mRNA downstream 63565 4217336 ~ 4300923 (-) False LOC120574358
XM_039826271.1 mRNA upstream 50655 4417976 ~ 4464991 (-) False LOC120575466
XM_039826268.1 mRNA upstream 50655 4417976 ~ 4464991 (-) False LOC120575466
XM_039826269.1 mRNA upstream 50655 4417976 ~ 4464991 (-) False LOC120575466
XM_039826267.1 mRNA upstream 50655 4417976 ~ 4464991 (-) False LOC120575466
XM_039826270.1 mRNA upstream 50655 4417976 ~ 4464719 (-) False LOC120575466
unassigned_transcript_716 other downstream 334228 4030179 ~ 4030260 (-) True trnas-aga_11
TU205089 other downstream 1047573 3311727 ~ 3316915 (-) True G151344
TU204921 other downstream 1449121 2911326 ~ 2915367 (-) True G151227
TU204905 other downstream 1468145 2873918 ~ 2896343 (-) True G151216
TU204751 other downstream 1765506 2596802 ~ 2598982 (-) True G151146
TU205631 other upstream 48856 4416177 ~ 4428301 (-) False LOC120575466
XR_005641996.1 other upstream 51405 4418726 ~ 4464991 (-) False LOC120575466
XR_005641995.1 other upstream 51647 4418968 ~ 4464991 (-) False LOC120575466
TU206002 other upstream 810995 5178316 ~ 5227241 (-) False G152043
TU206001 other upstream 811743 5179064 ~ 5183655 (-) False G152043

Expression Profile