RNA id: XM_039826271.1


Basic Information

Item Value
RNA id XM_039826271.1
length 2403
RNA type mRNA
GC content 0.53
exon number 13
gene id LOC120575466
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 4416177 ~ 4464991 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttgggggggaaacaGCTGTACGTAATTTGCTTTGTCCGGAATCCTGGCATGGTCATAATGTTCTGCCTCGAATAGCTAACGCCAAGTTAGACAATAAACAGGACCAGCTGCCTATATTGATGAAACCAGTTTAGTATACGTCTacgctttttttgttttgttttgggaAAAGCCAAATCCTTTGTGAATATCGAGCTGTGGACAATACAAACGGAAAAGGCAAAAAAGGTACAAAACCCAAGACTTTTGACTGGTGACTGTCTGCCGTCCAATGTTAATGTCGACCGACGTTGCATCTATAATGATACCCGTTAGTCGGGGAATAATGGAAAGAGACATTGATACAACAGCCGGACCCCTTGCAAACGCGGCCGGGGGTCCAGCAGCCGTCCGGGGGATGAAGCGAGGAGACCCGGCGGAGCCCGACGCTCAAAcagccgctgccctgacagactTAGCCGGGGCGGAGTGCAAAAGACCCAGGATAGACGGAACCGGGGGTGTTGTTGGTGATATTGGACAGAACAATGAGCCTTTAAACCCTGGTTTCCATGGATACCCACCCCACAGTCAGGGCTCTCAGGATTCGACAGGAGGACAGGAGGGATTGGTGGCCCCGCCCTTTTCACCGttcccccctccaccccctcctCAAAACGGGCTAGCAGGGACAGAGTTTGTCCCAGGGGCCATGTTTGGTGCTGGGGGCCAAGGCCCAGCAGAGTTGGGGGCTGGTGCTAATGGAGCCACCACCAATACCACCAACAACAACGGAAAGACAGAGGAGGTGCCCCAGGGTGAGGCGGGCGTACAGTGCGGCACAGGAGGCTCAGGATCCGGAGGCTCTGTGGGAGACCCCTCCGAGGCCAAAGGGACCCCCAAACGCCTCCACGTCTCAAACATCCCCTTCCGCTTCCGGGACCCTGACCTCAGGCAGATGTTTGGGCAATATGGGAAGATTCTGGATGTAGAGATTATTTTCAATGAGAGGGGATCAAAGGGTTTTGGCTTTGTGACATTTGAGACCAGCGCAGACGCAGAGAAAGCCAGGGAAAAGCTCCACGGCACACTGGTGGAAGGTCGTAAGATTGAGGTGAATAATGCCACGGCCAGGGTGATGACCAACAAGAAAATGGTCAGCCCCTACCCTAATGGAGAGGCTCTCAGCACGCTGCCTTATGCGGGGTGGAAGCTGAGTCCTATGATGGGGGCCGTGTACGGACCAGAGATCTACGCAGtCCCAGGGTTTCCTTATCCttcagcagcggcagcagccaCCACAGCAGCCGCAGCGTTCCGCGGTGCCCACCTCCGGGGCCGAGGCCGGCCCGTCTACAGTGCTGTGCGGGCTGCCGTGCCTCAGCCTGCCATCCCTACCTACCCTGGACTAGTGTTTCAGGACTCAGTCCTTAGTCCCAGATTGCCTCAGggAGGCTAccctgccgctgctgctgctgccgccgccgccgctTATCGCTACGCCCAGCCGGCCGCCGTAACCGGAGCAACCGCCGCAGCTGCCGCCTACAGCGACAGTTATGGCCGCGTGTACACTACAGACCCCTACCACGCTTTAACTCCAGCCGCTGCTGCTTACGGAGTGGGAGCAATGgCCAGTTTATACCGGGCAGGATACAGTAGGTTTGCTCCTTACTAAAACCACAAATCGCACCGAGGAATTTCACATCGCTCCAAAAACCCTTTTTCAAGCTCTTTGTTTGGCAGCAGCTCCcctccatttccttttttttttttgcaggcgGACTATAGTTACAACtcgtgtgttttgtttttgtttttcttattatataatatatattttttcccgtGGCGAGAGAGATCATATGCCACATCATCAACTCAAACTCTGTTTCTGTACTCTGTCTGTCGCCGACGACGCAGAAACGATGACAAAACTGCCAGGAGTGTCTCCCACATACAAAGCCGGAGTCTGCTACTCTGAACTACGGGGCACAAATAGGACTGTTTTTAAAACACTACGGGACCTGGACGGAGAGAGACTGCTGTTCCTGTGTGATCCTGCacacccttttttttcttcctagaAGTTTCTGAACTAACTGTATATCCACTGCCCTATAAGACCTAGTCAGACCTatgtacacacacttacatTGAACACTAAGTATACGGTTTCCTCTACATGTTTCTTTTAGCGTTGGCCTGCACACGACGACGCCACAGCACAGTCGTTAACTATAAAAGGTACTCCTGTTTTTAAACACTACACTGCGTAAAGCTACAGCCCCGTACAGCAGAGACGTCCCTCTGGTTTAGCATCGTGGTATGATAATGAAACTCGGACTGCTTATTACGGAAGATGTAGGAGTCATTCTTGTCATGTCATTTTGTGAAAGCCGGAATACCGAAACACTCAGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205640 lncRNA downstream 4816 4411516 ~ 4413160 (-) False G151783
TU205642 lncRNA downstream 4816 4411516 ~ 4413160 (-) False G151783
TU205643 lncRNA downstream 4816 4411516 ~ 4413160 (-) True G151783
XR_005641833.1 lncRNA downstream 80752 4334272 ~ 4337224 (-) True LOC120574176
TU205520 lncRNA downstream 149322 4268330 ~ 4268654 (-) True G151691
TU205645 lncRNA upstream 12393 4477384 ~ 4478879 (-) True G151785
TU205652 lncRNA upstream 53790 4518781 ~ 4522424 (-) False G151790
TU205653 lncRNA upstream 56842 4521833 ~ 4523574 (-) True G151790
TU205665 lncRNA upstream 118213 4583204 ~ 4584160 (-) True G151799
TU205683 lncRNA upstream 296741 4761732 ~ 4765493 (-) False LOC120574081
XM_039826264.1 mRNA downstream 50633 4364488 ~ 4367343 (-) False LOC120575464
XM_039826261.1 mRNA downstream 50633 4364488 ~ 4367343 (-) False LOC120575464
XM_039826265.1 mRNA downstream 50653 4364488 ~ 4367323 (-) False LOC120575464
XM_039826263.1 mRNA downstream 50655 4364488 ~ 4367321 (-) False LOC120575464
XM_039825390.1 mRNA downstream 58999 4355685 ~ 4358977 (-) True LOC120574889
XM_039824497.1 mRNA upstream 28593 4493584 ~ 4505527 (-) True LOC120574253
XM_039824498.1 mRNA upstream 28598 4493589 ~ 4505527 (-) False LOC120574253
XM_039823857.1 mRNA upstream 63461 4528452 ~ 4539716 (-) False LOC120573943
XM_039823858.1 mRNA upstream 63461 4528452 ~ 4539360 (-) True LOC120573943
XM_039824328.1 mRNA upstream 77299 4542290 ~ 4560444 (-) False tcf20
TU205621 other downstream 50643 4361848 ~ 4367333 (-) False LOC120575464
TU205622 other downstream 50643 4361848 ~ 4367333 (-) True LOC120575464
unassigned_transcript_716 other downstream 387716 4030179 ~ 4030260 (-) True trnas-aga_11
TU205089 other downstream 1101061 3311727 ~ 3316915 (-) True G151344
TU204921 other downstream 1502609 2911326 ~ 2915367 (-) True G151227
TU206002 other upstream 713325 5178316 ~ 5227241 (-) False G152043
TU206001 other upstream 714073 5179064 ~ 5183655 (-) False G152043
TU206003 other upstream 714073 5179064 ~ 5187041 (-) True G152043
TU206084 other upstream 996855 5461846 ~ 5464418 (-) True G152114
TU206270 other upstream 1084327 5549318 ~ 5554250 (-) False top3a

Expression Profile