RNA id: TU205642


Basic Information

Item Value
RNA id TU205642
length 1618
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G151783
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 4411516 ~ 4413160 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTTATTGACAACACCAGCATGTGTAGAAAGTCATTAGAGGATGGATTCCTGGAAAGAAACATATCTtgtacacacagaaaacacagtttcttttttttcttcagtgcaGCAACAGAAGCCAGCCACTGTAATGTAACTTTGAATATGGAGATGTTAATCAGTGATGGCACGAGCCTCCCACGGTGCTGACAGGTTTCGTGTTCTACCCTCTTCCTGTCTTGTCTCATCTCATCTggtctcccttcctctcctcctttcctctctctctctctctctctctctctcctctctgctgccTCTGCTCCAGCTCAGCAGTTTAGCACTCTCAGAGTGACAGTTTCACTCCTCCTCTATCACCTCAGTGCTATTATATACTGTGTtagggcaacacacacacacacacacacacacttcttctttcttctctctctctctctctctcttttctactAAGCATTTGTGATGTGGATTTCCCTCCAGAAGAAAGCTTGACTGTCTGAAGCCATCCGGCCTCCATGAAGACATCGAGCAGTGAGTCGCTCTACTGAagctcctctctttctttctttctttctttttaggaTAGAGGAGGTTACATCCTACTGCTGGCCCAGTTGAACCCCAACCCATTTCTTATAACActaaatgaaaatattttcCATTTGCACAAGaaaattaaacctttttttggTTTCAGATTGTGTACAGATTAGTGCCTGAATAGGGTCTCCCTCattcagcggtggaagaagtgtTCAGAtcattacttaagtaaaagtactaataccacactgtaaaaatactctgttacaagtaaaagtatgtattatcaggaaaatgtacttaaagtattaaaagtacaagtactcgATGCGGAAAAAAagcctcacattttagtaagtGGAAAGGATCCAAACTGTTGTGTCAGTCAACCAAGTGTTTAAtgagctaatcatttcagctgtaggcctgggtagtttaatttatacacAAACAtagtgtattttataaactacatgtgttttgtgtgcaacaatcttaatttgtaaagtaactagtaactaaagctgtcagattaatgtagtgaaaaagtatttccctctgaaatgcagCGGAGTAGAAGAAAGTGgcacgaaaagaaaagactcaagtaaattCCTCATTTGTACCTAAggacagtacttaagtaaatgtacttagttacattccacaacTGTGctcattttagttattttttagtgtttttaagtatatatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaaatgatGTGAATCAGTAATCCTCATAGGGTTCCGTGTAGTTGGTGGTCTGCGGCCGAGGAATGGTGTAATCTTTGTTGTGGTCGATGTTCTGAAACACACGCAGAAACACGGAATCACagcttcatctggtcagtgcAGTCAACAGCCCTTATGATGATCTGTGCTTTCATTAACCTTACAATATGACGGAGTCATAATTGCCTGCAGTAGTGAAAGGTCACGGCCCTTAATTGCAGAGCATGATGTGAAGTCAGATTATTAATCCTAAAATGGGTTATTACTCACTGTCACGGCGAATCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641833.1 lncRNA downstream 74292 4334272 ~ 4337224 (-) True LOC120574176
TU205520 lncRNA downstream 142862 4268330 ~ 4268654 (-) True G151691
TU205521 lncRNA downstream 142862 4268330 ~ 4268654 (-) False G151691
TU205459 lncRNA downstream 246018 4130804 ~ 4165498 (-) True G151639
TU205452 lncRNA downstream 327835 4082918 ~ 4083681 (-) True G151633
TU205629 lncRNA upstream 11352 4424512 ~ 4433861 (-) True LOC120575466
TU205645 lncRNA upstream 64224 4477384 ~ 4478879 (-) True G151785
TU205652 lncRNA upstream 105621 4518781 ~ 4522424 (-) False G151790
TU205653 lncRNA upstream 108673 4521833 ~ 4523574 (-) True G151790
TU205665 lncRNA upstream 170044 4583204 ~ 4584160 (-) True G151799
XM_039826264.1 mRNA downstream 44173 4364488 ~ 4367343 (-) False LOC120575464
XM_039826261.1 mRNA downstream 44173 4364488 ~ 4367343 (-) False LOC120575464
XM_039826265.1 mRNA downstream 44193 4364488 ~ 4367323 (-) False LOC120575464
XM_039826263.1 mRNA downstream 44195 4364488 ~ 4367321 (-) False LOC120575464
XM_039825390.1 mRNA downstream 52539 4355685 ~ 4358977 (-) True LOC120574889
XM_039826271.1 mRNA upstream 4816 4417976 ~ 4464991 (-) False LOC120575466
XM_039826268.1 mRNA upstream 4816 4417976 ~ 4464991 (-) False LOC120575466
XM_039826269.1 mRNA upstream 4816 4417976 ~ 4464991 (-) False LOC120575466
XM_039826267.1 mRNA upstream 4816 4417976 ~ 4464991 (-) False LOC120575466
XM_039826270.1 mRNA upstream 4816 4417976 ~ 4464719 (-) False LOC120575466
TU205621 other downstream 44183 4361848 ~ 4367333 (-) False LOC120575464
TU205622 other downstream 44183 4361848 ~ 4367333 (-) True LOC120575464
unassigned_transcript_716 other downstream 381256 4030179 ~ 4030260 (-) True trnas-aga_11
TU205089 other downstream 1094601 3311727 ~ 3316915 (-) True G151344
TU204921 other downstream 1496149 2911326 ~ 2915367 (-) True G151227
TU205631 other upstream 3017 4416177 ~ 4428301 (-) False LOC120575466
XR_005641996.1 other upstream 5566 4418726 ~ 4464991 (-) False LOC120575466
XR_005641995.1 other upstream 5808 4418968 ~ 4464991 (-) False LOC120575466
TU206002 other upstream 765156 5178316 ~ 5227241 (-) False G152043
TU206001 other upstream 765904 5179064 ~ 5183655 (-) False G152043

Expression Profile