RNA id: TU205645


Basic Information

Item Value
RNA id TU205645
length 1368
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G151785
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 4477384 ~ 4478879 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCTGTTTGACATAACAGGCAAAACTAAATATTAGCCATTTCCACAAATCAAAGATTTTAGCTTAAGGTTTTTCAGATAATCACGAAGTTAGATTTGCACTTCCGTTAAATGACAGTACTGTACATTGTGAAAGGCAGGCTATTGCAATTACACAACAGGAAACTACAAAGAAGTAGATGGTCTTACCACTTGCAGAGCACATCTTTTCTCATTGCAGGCACCGTAGTCTCCAAACACCACCACAATCAGCATCACTGAGCCCAGAGCAATCAGTACAGTCACCGATAACAAATGCACTTGAGTTGAAGTCCTCGATTTGAAAGATGCCTCTGGTGCTGTCGCTGAGCCTCAGCCACAAGCCGAGACCCAAAAAGGCAAAGCCCACCaactgacaaacacaaatcaaaatGAAGCCACATTTCTCACAACATGGTTTCACGTCAAATCTGTACATGGTTGTGGTCAGATGTAATATTTTCGGGGCGGACAGCTGaacatgactttttattcacACTGTGTATAAGCACAGGGGGCATGTCGGGGCACAAAAATATCCTTTAAGAGAACAAAGTCACAGAATGAAACCAGCTGTGGGACACTTAGGTAAACACCTGGCAAACAACCAAAATACACTGAAACACAATGAAACACTTGACAAGACAGCACATGAAAAGCACAAAAGAGCAAGTTAAAACAGAGGGTGAATAAATGCCATCTCTCTTTTGGTTTCCTTTCATCTAAAAAAGGGTCCACCTTTTCGGTCCCGTTTGTTtcttgtatgtatgcatgtatgtattatGGCATtgatacccgacccgagcccgacgggccgggcagatatttagaaattatggtcgggttcgggtcgggctcggtcacatcagcgtgataaggcatttgttgtaaaatggtgctgtggctcctttaagagagctcagtgtgtgtggaaagtgggcagaagagagagagagagagagaggaagcagacgtgttgtagatgtgaccagagcagagttggtggaataagttgAAGTTTTGCTCACGTTGCCCAACGTTATTAATTTTATAatgtcggccctggaggtaacgagtctcccctggttttctgatcacggtcggaaacgaagcgagCAGGGGAGGTTAACacgttgaacattttaacagtttattaacatgggcttgttgccccgtgtgagcTGATgccctcatctgttgacatttccgaatgccttcctacagttgcttaataaaagctttccacacaaaaacgcAGCgtctacatgtgtcattagtatgaggggTAGGACACGaatttcttaatacctgtcggacgtgggccgggctcggacagaaaaattcagtccgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205629 lncRNA downstream 43523 4424512 ~ 4433861 (-) True LOC120575466
TU205640 lncRNA downstream 64224 4411516 ~ 4413160 (-) False G151783
TU205642 lncRNA downstream 64224 4411516 ~ 4413160 (-) False G151783
TU205643 lncRNA downstream 64224 4411516 ~ 4413160 (-) True G151783
XR_005641833.1 lncRNA downstream 140160 4334272 ~ 4337224 (-) True LOC120574176
TU205652 lncRNA upstream 39902 4518781 ~ 4522424 (-) False G151790
TU205653 lncRNA upstream 42954 4521833 ~ 4523574 (-) True G151790
TU205665 lncRNA upstream 104325 4583204 ~ 4584160 (-) True G151799
TU205683 lncRNA upstream 282853 4761732 ~ 4765493 (-) False LOC120574081
TU205827 lncRNA upstream 391008 4869887 ~ 4893318 (-) True G151924
XM_039826271.1 mRNA downstream 12393 4417976 ~ 4464991 (-) False LOC120575466
XM_039826268.1 mRNA downstream 12393 4417976 ~ 4464991 (-) False LOC120575466
XM_039826269.1 mRNA downstream 12393 4417976 ~ 4464991 (-) False LOC120575466
XM_039826267.1 mRNA downstream 12393 4417976 ~ 4464991 (-) False LOC120575466
XM_039826275.1 mRNA downstream 12393 4420748 ~ 4464991 (-) False LOC120575466
XM_039824497.1 mRNA upstream 14705 4493584 ~ 4505527 (-) True LOC120574253
XM_039824498.1 mRNA upstream 14710 4493589 ~ 4505527 (-) False LOC120574253
XM_039823857.1 mRNA upstream 49573 4528452 ~ 4539716 (-) False LOC120573943
XM_039823858.1 mRNA upstream 49573 4528452 ~ 4539360 (-) True LOC120573943
XM_039824328.1 mRNA upstream 63411 4542290 ~ 4560444 (-) False tcf20
XR_005641996.1 other downstream 12393 4418726 ~ 4464991 (-) False LOC120575466
XR_005641995.1 other downstream 12393 4418968 ~ 4464991 (-) False LOC120575466
TU205631 other downstream 49083 4416177 ~ 4428301 (-) False LOC120575466
TU205621 other downstream 110051 4361848 ~ 4367333 (-) False LOC120575464
TU205622 other downstream 110051 4361848 ~ 4367333 (-) True LOC120575464
TU206002 other upstream 699437 5178316 ~ 5227241 (-) False G152043
TU206001 other upstream 700185 5179064 ~ 5183655 (-) False G152043
TU206003 other upstream 700185 5179064 ~ 5187041 (-) True G152043
TU206084 other upstream 982967 5461846 ~ 5464418 (-) True G152114
TU206270 other upstream 1070439 5549318 ~ 5554250 (-) False top3a

Expression Profile