RNA id: XM_039824147.1


Basic Information

Item Value
RNA id XM_039824147.1
length 9759
RNA type mRNA
GC content 0.53
exon number 17
gene id LOC120574081
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 4585173 ~ 4765493 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTTTTtgggaggagagacagaagaaagcAGAAGGCAGCCGGGGAAGGGGAAAAACTGGCAATAGCCAATCCCCCCTTCCACACATAGTCTGGACACGACGGAGGCCACTGGAGTATTTGCTTTTATCTTtcgttttttgttctttttttttctcatcgcGCTGCTGGGAGGTGCTTTACCTTTTCATTTGCTTGCTCTCTCGGTCCTCTGTCTTCTCATCTATTTCGCCATTTACCTGGTCAACAATTTCTTCTATTTATGAGCCAAACAAGGAGGGAGAGattgagagaggcagagagacagagaaaaagagaaagaggagggggatttattttttttgcccccTTATTCTCTTTTTGTCCCCTTCGTtcattcctccctccctctccatcGCTATCACTTGCAGCCCTTTCTATCCCTGTGCAACCCACGCTCCCTCCTCCCCTActgcctccctcctcctcccctaccgcctccctcctcctcctcctctccaccacaCCACTCCGCTCACTGTCCACCCGTAACTTTGGCTACTTTTTTGATTCCACCAGTGTTTTAATTTCCTTACTTAAAAAACCCCAACTCTTTTAATTGGCTTGCTTGTATTTTCTATTTACgccttttttttcacttttgtacCTTTtcctatccccccccccccttctctttttttcctcctaccATCCTATGCATCTTTTTTGGGCGATTCTTAATTCTAACCATAGACTGGCGGACGTCAGAAAAGCACGCAACGCCAAACGTCTCTTCGGAGGAGCGAAGGGGAGAACAGAAGTGAAGCTGCTCCTGTGGAGTACAATTAACTCGAAATTGCTGCTTTACCCTCTTGACCCGTCGAGGATTTTACCTAAAACTGCTTTCAGCCTCCCTCAGTCTGAGGctatgagagggagagaggagtcCCAGGCCGCACCATCATGCTACTTCTGAGATGCTGGGATGAGACTTTGGCTGGCAAAACACAAGGTATTACCCTCCCACTCCTCCACCATGCCTGTCTGCGGCTGCCGCAGCCCCTCCTCGCCTCGGGGCCAAGCTGGGGCCTCCTGCTCCGCCCCCTCGGTCGCCCAGGAGCAGGAGAGGCCAGTCCGacccccacctccacccccGCCTCCGTCGCTCCGGCGCCACACCAGCGCCTCCCGCCTCCTCTCGCTTCTTCTCCTGCTGCTCTGCCTTCTCCACCTGCCCCCGGCCTGCCACTCGCGGCGAGAGAAAGGCGGGGGAGGTGGTGGTGCGGGGGGAGGCGGTGGTGGCGGCGGCGGCGCCCACTACATCCCCATCCCCCAACCCCCTCCCCACCACATGGCCCTGCCCAACATCCTGCGCGGCCTCAGCATCGCCGTCGTCCTGGTGGGCAACTCCAGCGAGGTGGCGCTGGCCGGGGCGCGGGAGAAGGATGACTTCCTGCACATGGCGCCCAACGTGGAGGTGCTGACCATGAACGAGACGGACCCTAAAAGCATCATCAAGAGCATCTGTGACCTCATGACGGAGCACTGGCTGCAGGGCGTGGTGTTTGGGGACGACACCGACCAGGAGGCCATCGCCCAAATCCTCGACTTCATCTCCGCCCAGACCCACATCCCCATCCTCGGAGTCCGCGGGGGCTCCTCCATGATCATGGCCGCCAAGGATGACGACTCCATGTTCTTTCAGTTCGGCCCCTCCATCGAGCAGCAGGCCTCGGTCATGCTAAACATCATGGAGGAGTACGACTGGTACATCTTCTCCATCGTCACCACGTACTACCCGGGTTACCAGGACTTTGTCACCAAGATCCGTAGCACCATCGAGAACAGCTTCGTGGGCTGGGAACTGGAGGAAGTTCTACTGCTCGACATGTCCGTAGACGACGGAGATTCGAAGATCCAAAACCAGCTGAAGAAGCTGCAGAGCCCCGTCATTCTTCTCTACTGCACAAAAGAAGAGGCCAACACCATCTTTGAGGTGGCCCACTCTGTTGGGATCACGGGCTACGGCTACACGTGGATAGTGCCCTCGCTGGTAGCTGGAGACACTATTGTAGTGCCTGCAGAGTTCCCCACAGGTCTGCTCTCCGTCTCCTATGACGAGTGGGACTACAACCTGGAGGCCCGCGTTCGCGACGGCGTGGCCATCATCACTATGGCAACCTCCACCATGATGATGGACCGCGGACCTCACACTTTGCTGAAGTCTGAGTGCCACGGAGCTCCGGACAAGAAGACCCCCATCTCAGGCAACCCCAACGAAGTGCTCAGGTACCTGATGAATGTGACTTTCGAGGGTCGAAATCTGTCGTTCAGCGAGGACGGATACCAGATGCACCCCCAGCTGGTCATCATTCTGCTCAACAAGGAGAGACAGTgggagaggGTGGGTAAATGGGAGAATGGTTCCCTGTCCATGAAGTACCACGTGTGGCCTCGCTATGAACTATATGGGGGGGCAGCGACCAGGGAGGACGACCACCTGTCCATCGTGACGTTGGAGGAGGCTCCGTTCGTCATCGTGGAAGACGTGGATCCGCTCAGCGGGACGTGCATGAGGAACACTGTACCCTGCCGGAAACAGATCAAAATCCTCAATCAGACGAAGGATTCTGGGATCTACATAAAGCGCTGCTGTAAGGGATTCTGCATCGACATCCTGAAGAAGATCGCCAAGCAGGTGAAGTTCACCTACGACCTTTACCTGGTCACTAACGGCAAACACGGCAAGAAGATCAACGGGACATGGAACGGCATGGTGGGAGAGGTGGTGTTGAAAAACGCCCACATGGCCGTCGGCTCCTTGACCATCAACGAGGAGAGGTCGGAGGTCATCGACTTCTCCGTCCCCTTCATCGAGACGGGTATCAGCGTCATGGTGTCCCGTAGCAACGGCACCGTTTCCCCCTCGGCCTTCTTAGAGCCCTTCAGTGCGGATGTGTGGGTGATGATGTTCGTGATGCTGTTGCTGGTGTCAGCAATGGCTGTGTTTATATTCGAGTACTTCAGCCCTGTGGGCTACAACCGCTGTCTGGCTGACGGCAGAGAGCCTCACGGCCCATCCTTCACCATCGGTAAGGCCATCTGGCTGCTGTGGGGTCTGGTCTTTAACAACTCTGTGCCAGTGCAGAACCCCAAAGGCACGACCAGTAAGATCATGGTGTCCGTGTGGGCCTTCTTTGCTGTCATCTTCCTGGCCTCCTACACTGCCAACCTGGCTGCTTTCATGATCCAGGAGGAATATGTGGACCAGGTAACTGGTCTCTCAGACAAAAAGTTCCAGAGTCCCAACGACTTCTCGCCTCCGTTTCGGTTCGGCACTGTCCCAAACGGGAGTACGGAGAGAAACATTAGGAACAACTATCCAGAAATGCACGCCTACATGACAAAGTTTCATCAGAGAAATGTCAACGAGGCCCTGGCCTCTCTCAAGGCTGGCAAACTAGATGCTTTCATTTACGACGCGGCCGTGCTGAACTACATGGCCGGCAGGGACGAGGGCTGCAAGCTGGTGACCATTGGCAGCGGCTACATCTTTGCCACCACGGGGTACGGCATCGCCATCCAGAAGGAGTCGCTCTGGAAGAGACATGTGGACCTGGCCATCCTGCAGCTCTTCGGAGACGGTGAGATGGAGGAGCTGGAGTCCCTGTGGCTGACGGGGATCTGCCACCACGAGAAGAACGAGGTGATGTCCAGCCAGCTGGATGTGGACAACATGGCCGGTGTCTTCTACATGCTCGGCGCCGCCATGGCTCTGTCGCTCATCACCTTCATCTGCGAGCACTGGTTCTACTGGCAGCTGCGCTTCTGCTTCATGGGCGTCTGCTCCGGCCAGCCCGGCTTCGTCTTCTCCATCAGCAGGGGCATCTACAGCTGTATCCACGGTGTGCAGATTGAGGAGAAGAGCAGCTCGGCATTGAACTCCCCATCAGCCACTATGAACAACACGCATTCCAACATTATGCGCCTCCTACGCACCGCCAAGAACATGGCCTCCCTGTCGGGGGTGAACGGCTCACCCCACAGCGCTCTGGACTTCATCCGCCGGGAATCCTCGGTTTATGACATCTCTGAACACCGGCGCAGCTTGGCGGGCCACTCCGACTGCAAGCCACCTTACATCCCGGAAGACAACATGTTCAGCGACTACATCAGTGAGGTGGAGAGGACGTTTGGCAACCTCCACCTGAAGGACAGTAATCTGTACCAGGACCACTACCTGCACCACCATGGCTCAACACTGGGGCTCAGCGGACCGGCTCCCAACAGGCCCCACAGTCTGGGCAGTGCTAGTTCTCTGGAGGGGGGCATGTTCGACTGTGACAGCCTGGGCGGAGGGATGGCCCCTATTTTCACCACCCAGCCATGCTCAGCACTGACCCACAGGAACATGAGCAAGTTTGACCTGCTGTCTGGACAGACTCCCCCCTCGAGCCAGAGCTTTAAGGGAGGCCTGCCGGACCTGTACGGGAAGTTCTCCTTCAAGGGAGGCGCCTCAAGTTCCACGTTTATCCCTGGGCACGGCTACTGTGGAGGGAGAGGCGATGACGATGGGAATATACGCTCAGATGTCTCGGACATTTCCACGCACACAGTAACTTATGGGAACCTGGAGGGTAATGCCAAGAAGCGCAAACAGTACCGCGATAGCCTGAAAAAGAGGCCGGCCTCTGCCAAGTCCAGACGGGAGCTGGACGAGATTGAGCTGGGCTACAGGAGGAAACCCTACCACATCAGCCACCACCATTACCACGGCCACCGCTCTACCTCCCCACCGCTTTTGCCCGCTGAacggaagagaggaggaggaggaggaggaggtggaggaggcaACAACGACGGGAACTCCTATCTCTTCAGAGAAAAGGAGAGCGTTAGGGATTTTTATTTGGACCAGTTTCGGCCCAAAGAGGGCGTCCCTCAGTGGGAACACGTGGACCTGACAGAGGGCCCTGGGAGTAGAGATGGAGGAGTGCCGACCTGCACCACCCTGGTTCCAGTGGATGACTTTCTTAAGGGCAAACCCAAAAAGTCAGATTCAAAGAGTGGGGGAGGATCTGGGCTAGCAGGGGGAGAGTGGGAGTGCAGGAACTGCCGGGCTAGCGGGGGAGGAGTGGGCAAGCAGATGTCCATGCATGGAGGAGGGGGTGGTGGTGTTGGGTACGGTGGTGGTATGAGCTGCGGGTCCTCTGGAGGCGGAGGAAACAGCCGCCCCAGCTCTGCGACCTGCATGCGCTGCGAGGGCTGTAAAAAGACAGGAAACCTCTACGATATCAGCGAGGACAACAACCACCTCTTGGAACAGATGGGGGGAGGGAAAggcgggggaggaggaggaggcggcggCGGCATGGGTGCAGGCCCTCAGTCTCAACCTCAGGGCCAGCCGAGGAGAAAGAGTGGAGGATTGGGCAAACAACTGAGGCGGCAGCACTCGTATGACGCGTTTGTGGACCTTCAGAAAGAGGAGTCAGGTGGGATGGGAAGTCTGATGGGCCTAGGGGGCGTTGGAGGGATGAGCGGCGCGGGTATGGGAGGGATGCTGCCCCCACCCAGGAGTGTTAGCTTGAAGGAGAAAGAACGCTACATGGAGGGCTCCAGCCCCTTCGCAAACATATTTGAGCGTCACGGGGGCtcggagagagaaagggaaagagacCGGGACCCATTGTTTTACGCAGGTGAGGGCCGGAAAAGACCCGGCTCGCCATTCGGCCTGTTCAGAGGCGGCGAGGGCCTCCACCGCCGCTCCatcggagagagagacatgcgAGACCGGGACAGGTCTTTGATGgaaggaggaggtgggggagggTTCTCTTTATCCAAATCTCTTTACCCCGACAGGGTAAACCAAAACCCCTTTATACCCACCTTTGGGGACGACCAGTGTCTGATGCACGGAGCCAAACAGTATTACATGAaaaagcaacagcagcagcagcagcagcagcagcagcaacaagttgCCAAAAACAGCCGAAGTGACTTCAGGAGCCAGATGAGCACGACGTCATATCTGCCGGCGTCCGCCACGGCCGGGGTGATGTCCAACGTGACCCCCCGGTTCCCGAAAGAGCTCAGCCACGGTGGAATGAACCACCACGGCTCCATGCTGGGGGTGGGCCCCCCGCGTCCCTTCAACGGAAGCAATGGCCATGTGTACGAGAAACTCTCCAGCATTGAGTCTGACGTGTGAGAACAAAACTAAaaaagggggaggaggagcGGACGATGGCGAGGGaggaagggggtgggggggagtaATAGAGGCATGTACTAGTGTTAGGAGATCAGGGATGATTTTAAAAGACACTGTCCACACACTGCAACCCTAGCCCATATTGGGACAGCACGATTAGTTAAGAGGAGAGGACTAGAGACTGTGACATAGAGAAAACATAGAGTACAAAATCTGGGTTAAAAAATCAGGACACTCTGAGGAGGTGTGGGATGTTAACCCTCTCTCAGACACGGCCAAAGCTACTCTACTTTTATGTCCACTCACGGTCAATCAAcatcccccccctctccctccctcaacATAACACAAATGCGCTCGACTCCCCAAGTCCATTATTTTCACCCACCGGTGACGCAGAAGTCGATGTACTCGGCTGTTATCGCAAAGAGGCGACAGCTCATCTTTTAGTTTGATACTGGACGTGTGAGCCTGGTGCGATGCGATTGGCTTGTCGACGCGAGAGCTCCCGCCGAGGCGCCTCTGAGGAAAAGACTGGCGAGAGCGAGCGAGCCCATCTGCCCCTGTGTCACCGCCGAACGGAGACGTTGTCGCGCTTACCGCAGCCGGCGACACAGGAGATgactctctgcctgtctctgtggAAGGAGACAGCCCGGCCTGTCTGTGTCCTCTCCGTCCCAACTCGTctctcccccacccccacccccacccccctcccctcctcctcctccctcctcctcatcccccaACGCCAAATGAGCTGATCTTGTTTGCTTTGAGAAATACAATCATGGATGATAATAAGATATTCttatagaaaacaaaaaaaacagggtaTAAGAACAACAATAATATTGATAACATTGTGAATAACAAAGATGTTAGCGCTGATTATGaaataagtttgtttttttaatttgttttatgttCCGCTGGTATGATATTTCACTACTGTTTTAGTACCTGTAGTTGGATCCTGTGGTCCTGCTGTGGCAGCAGGACGGCTGTTCTGAGTTCAACCAACCAGCCAGAAAGACTGAGTCCTTAACTTCTTCTTTTCAATGGTTTCTGTAGAATATTCTACTTCATGCTCATACATTTATTTGCTCCTTGTGGAAAAAAATCTGGATCTGGAAAGACATGTTTAGAGCTGACAGATCCTTCTTTAATGTTTCAAGACGTTACAAATGaagtgcacacacaaacacattcactcacacttTAAACACATGCGGATTTTGTCGGTCTGAACTTGTGTTACTGTGATCGGCGCGTTTCGTCCGAAAGCTGAAGAGGCTGAGAGGAAGGACGTGTCTTAATGGTCTCCAGTGGATGTGTCCTCCGGTTCACGCGCCCGTCCCCGCGCGGCAGGCAGCGCCGGGACGGACCGGCATGCTTTGACTCGGTGACTCTCTTCACGTTCTATTGAGCCAAAGCTGCAGTGGGAATTTACAGCAAGGCTTTGAGACACTGCAGCCGATGGTTTAGCTCCAAGAGGAGATGTTTTATAACTTCGTAAGAAAATTGATTTCATATGTCGAACGTGGGCAGCGCTTTACGAACCAGATGTATTTTTAGGATGTCACGGATAGACCGACCGCGTCTCACTTCACAACACGGCAGCCTTTAGACCACTTCTTTTATTCAGGTTACATGATGACAGTCACCAGGCACTCACCTTTGTATGTAATTTATTTTCCCGCCTCTCACCAGTATCTCGTAGAAGGCGTTAACTTATTCACTCACGTCAGCAGTCTGAGAGGCGCGCACAGAACGCTTTGTTTGTACATTGTGTATGATAAATATATGCACTGCtgataacaaaaaaatgtgtagGAAAAATGGTGTCGCCCTGTGACAAGGATACCGATTAAAGCTCGAGCCGAGGAGGATGTCGATTTGGGAGAGGCCTCTTCGACACTGACAGAGGCGTCCGGAAGGCGTCCCGAAGGCGTCCTGAAGGCGGCCATCTTGCGAACGCTTTCCGGCTTTTCACTTTAACTGATGTagatagtattttttttttgctggagaGGCCTCATTGTATTGCACAGGACCTTTTTACTCGGTGTAGGTTCAGGCACTTCAGTAGACATGCCTTATCATCCCATCACCAtgccccccccaacccccccaacccccccagaGCTGTCTGATGATCATTAACTGTAAATGTATACGTACTATTAAAAGGTTTGATCTTCGATTAGCTGGCGGCGTCAGAAGTTCAAGGGCTGCGGGAGATTGCGAAGGAGTGCTGGCCTGAGCCTGGAGCTGCTGGAGTGTGTAGAGTGTGATCTTTGTCCTTGCGGACTTCTATCTTATATCCTTATCTAAATGCACCAATGTAATAGGTTGCcgtggcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgtggaaGCAAATCACGATTGAATGATAACCGCTGTTTTTTTCTGATAACTATTCATAAGTTCAACAGCCTCTCCTCCTACTCGTCCCTCGCTCCACAGACAACACCATCAAAGTGAGACTGATCGAGTTAGCCTTAAATCAAACTGATCCATCcatctaccccccccccccacaaccctaTGACTCTCCTAATGAATAGATTGGGATCTCTGGAATTTTTATACGCACACATTTTTCGAGAGTTCAGGTCAACCATTATCAGCGAGACGGTATAAGAAGGAGAACGGGAAATGACGGGGAAATAAGAAggagcagaagaagagagaCTTTGGAGCGGGCATCAATCAGTGTCAGCATTTGTACGTTCAATCTTTTCCttgtaaataatatatttaaaactcttttcactttgtacagtcgacagacagacaggatgtaACTTTCAATATGTTTTACAGCAatttaagaaataaacaaaacgataataaaaactgataaaaacgAAAAAAGTCATCGACAAAATTATGCAAAAATATACTTAAGACACAAATATTACTAATCATAAGTGATATAATTGCACCTTTTTACTTTAAGTCTCATGTTTACTTAATTATAATAGTTTACCAATCAGTATACTTATTATGTTAAgaattatgctttttttcatattttcactAACGTGTTGGAAATCGAGGATACTTTACTGTAGGTGTAGACGTTTGGTGattaaaaaaagggggaaagttTAGTTTTAGGAGTCTTCGCTAAGTTTCCCTTGAATTGTGTTAGATTCTCTCTTTTAAGGTAAGCTCTTCGTCATGCTTTTTGAGATCGACTCAATTATCTACACATTTATGGAATACAATATTACATGTATACATAGATGATATTTGCATATAGAGGCAGTATATTGTGATCCTTCATTTTTAAGCAGCAATCCTTGTTAAAAAAACTTACaagatatttgtgtttttgttgccctttttttttttctttcttctcaccTGGGCTCTTTAACGGTGTTTGCACACAGAATTTAGAGCCATCGTCGGCCTGGCCTATCCTCTTCCCTCTCTGTGTTTGGGATAGACATCACTGTGGTAaaggaatacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG:

id description
K05210 GRIN2B; glutamate receptor ionotropic, NMDA 2B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205665 lncRNA downstream 1013 4583204 ~ 4584160 (-) True G151799
TU205653 lncRNA downstream 61599 4521833 ~ 4523574 (-) True G151790
TU205652 lncRNA downstream 62749 4518781 ~ 4522424 (-) False G151790
TU205645 lncRNA downstream 106294 4477384 ~ 4478879 (-) True G151785
TU205629 lncRNA downstream 151312 4424512 ~ 4433861 (-) True LOC120575466
TU205683 lncRNA upstream 4636 4761732 ~ 4765493 (-) False LOC120574081
TU205827 lncRNA upstream 112791 4869887 ~ 4893318 (-) True G151924
TU205857 lncRNA upstream 256421 5013517 ~ 5024092 (-) True G151951
TU206013 lncRNA upstream 413208 5170304 ~ 5170652 (-) True G152052
TU206047 lncRNA upstream 530762 5287858 ~ 5290361 (-) True G152081
XM_039824328.1 mRNA downstream 24729 4542290 ~ 4560444 (-) False tcf20
XM_039824327.1 mRNA downstream 24729 4542290 ~ 4560444 (-) True tcf20
XM_039823857.1 mRNA downstream 45457 4528452 ~ 4539716 (-) False LOC120573943
XM_039823858.1 mRNA downstream 45813 4528452 ~ 4539360 (-) True LOC120573943
XM_039824497.1 mRNA downstream 79646 4493584 ~ 4505527 (-) True LOC120574253
XM_039824151.1 mRNA upstream 19666 4776762 ~ 4782184 (-) False wbp2nl
XM_039824150.1 mRNA upstream 19666 4776762 ~ 4782184 (-) True wbp2nl
XM_039824368.1 mRNA upstream 34348 4791444 ~ 4794849 (-) True rrp7a
XM_039824369.1 mRNA upstream 38623 4795719 ~ 4803743 (-) True poldip3
XM_039824372.1 mRNA upstream 67156 4824252 ~ 4828932 (-) True ndufa6
XR_005641996.1 other downstream 120182 4418726 ~ 4464991 (-) False LOC120575466
XR_005641995.1 other downstream 120182 4418968 ~ 4464991 (-) False LOC120575466
TU205631 other downstream 156872 4416177 ~ 4428301 (-) False LOC120575466
TU205621 other downstream 217840 4361848 ~ 4367333 (-) False LOC120575464
TU206002 other upstream 421220 5178316 ~ 5227241 (-) False G152043
TU206001 other upstream 421968 5179064 ~ 5183655 (-) False G152043
TU206003 other upstream 421968 5179064 ~ 5187041 (-) True G152043
TU206084 other upstream 704750 5461846 ~ 5464418 (-) True G152114
TU206270 other upstream 792222 5549318 ~ 5554250 (-) False top3a

Expression Profile