RNA id: TU206270


Basic Information

Item Value
RNA id TU206270
length 1639
RNA type TUCP
GC content 0.51
exon number 3
gene id top3a
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5549291 ~ 5567539 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aggatcCTCGTCCACCAGCTCCAAGGCCCCCCGGACCAGAGCCACCCAGACCCCGGGGTTCAAATTCTCGAACTTGCCTTCCTCCTGCCCCCTCCTGGACCCCGCAGCCACAACCTCCGGCAGGCGGCAGCGCTCCCAGCGTAGATGACGATGTCATTGTGTGTAACTGTGGTCAGGATGCGCTCCTCCTGACCGTGCGCAAAGACGGCCCCAACCAAGGCCGTCAGTTCTACAAGTGCAACGCGGGGGGCTGCAACTTCTTCCTGTGGGCGGACCAGCCGAGTCAGCAGGGGGAGCCGCAGGGTCGAGGGCCTCCGCAGGGTCGAGGGCCTCCGCAGGGTCGAGGGCCTCCGCTGCAAGCGCCGCCGAGGCCCCCTCTGGGGTTCAGGACTACCCCTGGAGCAGGCAGAGGGCAAGAAGGGGGTGCAGGAGAACACACGGGACCGACAATGTGTAACTGTAACGAGACAGCGGTGACGCGAACGGTGCAGAAGGACGGTCCAAACAAGGGCCGGATGTTCCACACCTGCGGGAAACCAAGAGAGCAGCAGTGTGGCTTCTTCCAGTGGGCTGATGAGAACGAACCGCCACCAGTTGGCTTCGGTGGTGGATTTAATGGCGGTGGAGACggagggaggaaggggaggaagaTCACGGGAGGTGCCACCGCTAACAAGCCTGCAGCTGCTAAGAAACCTCGTACCTGTGGCATCTGCCACAATCCGGGACACACCCGAGTCACCTGTCCCCAGCGGTGACCGCTGCTTAGAGACTCTTAACGTGGAGTTACTGAAGTCTCTGACTTCAAAGTGTGGAGTCAGATATGCAGCAAAACAGATTGTACGTACCTCCTCCCAGGAGATGGACCTCTTCCTCTGGTATGTAGGAATTCCAAGAGGGCAAAAACCGCTTCGAGCACCAGACCAAAGGCATGTCATGACTAAGGCTAAAAACATGTAGTTTATCAGGTCAATAGAAACTAGACCTTTCCCTTCTCTTTTCATCCAGCTCTATTTTCTCAGGTCTCCTCAGATCCTCAATGTGTTTTTTCTCCGAGAAGAATGGCTCTTTTCTGGCCCCTGGGGAGGAAAAGTTAGGGCTCATTTTGGGGTCAGGTAAAACTTTGAGAAtcaacattttaggaaatacgcttatttgctctcttgccaagagttaggtGAGATTGTTTGTTACCGCAGAAACCTGAAGATGCTCAACTGTTAATGGGAAATTTGCTCAGCTGGTCAAAaaaaacaccatcgagcaatAAATCCTCCGTCTAGTGTGTTTATTCCCAATCCTGACAGCTTGCCTCAGATCAGTTTAAGGAGGGTGATTCTGGCACAAATTGAATACATgtgtattttaaagaaaacatgtgCACACAGTTTCTTAATAATTAATAGTGTaattaatgtgtttattaacATGTTTACTACAGGTTCATCAGTGTTGCCATCACTAAGTATCTGAAACAAGAGCCAAGTATTTTACATTTGTTGATTCTTCaaggtggttgttgttggaagaaaccacaaaatatatttttacattgtgaATATGTAGGCAAAAATACTCGTACTCTCTCTCCAGTCTGAGGAAGTGTCCGTACCAAGATGTACTATTTTAATATTGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206259 lncRNA downstream 39926 5508717 ~ 5509392 (-) True G152233
TU206076 lncRNA downstream 101261 5446503 ~ 5448057 (-) True G152107
TU206072 lncRNA downstream 154203 5390505 ~ 5395115 (-) True G152104
TU206047 lncRNA downstream 258957 5287858 ~ 5290361 (-) True G152081
TU206013 lncRNA downstream 378666 5170304 ~ 5170652 (-) True G152052
TU206282 lncRNA upstream 29129 5583379 ~ 5585169 (-) True G152249
TU206284 lncRNA upstream 29129 5583379 ~ 5587735 (-) False G152249
TU206281 lncRNA upstream 30986 5585236 ~ 5587735 (-) False G152249
TU206292 lncRNA upstream 47063 5601313 ~ 5606088 (-) True G152256
TU206310 lncRNA upstream 105836 5660086 ~ 5660898 (-) True G152270
XM_039825215.1 mRNA downstream 8117 5533856 ~ 5541201 (-) False cbx7a
XM_039825214.1 mRNA downstream 8117 5533856 ~ 5541201 (-) True cbx7a
XM_039825216.1 mRNA downstream 9543 5533856 ~ 5539775 (-) False cbx7a
XM_039824486.1 mRNA downstream 70651 5466251 ~ 5478667 (-) True st13
XM_039824487.1 mRNA downstream 70947 5466781 ~ 5478371 (-) False st13
XM_039824832.1 mRNA upstream 26013 5580263 ~ 5582864 (-) True bud31
XM_039824952.1 mRNA upstream 56340 5610590 ~ 5613722 (-) True atp5mf
XM_039824640.1 mRNA upstream 107611 5661861 ~ 5717548 (-) False tnrc18
XM_039824636.1 mRNA upstream 107611 5661861 ~ 5717548 (-) False tnrc18
XM_039824638.1 mRNA upstream 107611 5661861 ~ 5717348 (-) False tnrc18
TU206084 other downstream 84900 5461846 ~ 5464418 (-) True G152114
TU206002 other downstream 322077 5178316 ~ 5227241 (-) False G152043
TU206003 other downstream 362277 5179064 ~ 5187041 (-) True G152043
TU206001 other downstream 365663 5179064 ~ 5183655 (-) False G152043
XR_005641996.1 other downstream 1084327 4418726 ~ 4464991 (-) False LOC120575466
TU206279 other upstream 20430 5574680 ~ 5613668 (-) False atp5mf
TU206260 other upstream 26118 5580368 ~ 5582861 (-) False bud31
TU206278 other upstream 56306 5610556 ~ 5613668 (-) False atp5mf
TU206522 other upstream 628158 6182408 ~ 6228114 (-) True G152441
TU206683 other upstream 1165534 6719784 ~ 6720643 (-) True G152567

Expression Profile