RNA id: TU206482


Basic Information

Item Value
RNA id TU206482
length 1968
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G152414
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 6146825 ~ 6148812 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTTCAATAACTTAAGTTGTTTGATTGATTATGGATTATTGGTCACAAACAGCATCACCAGTGTGTTTCTACGTCTTGTTACAAATGGAAATATAAAGGACACAAAAACAATATctacatttgaaatgtttggCTTTTTGATGTACTTGTTTTGACCCTTTTAGTTTTCTgtaattaaaatgtcaaaaacaatgTGTAGTagattaaagctatagtgcgtagtttctgtctcccccatgaggactTCTAAGtattgacaacaaaactgtcagcgcgtccacatgacacaagccttctgtgactgCGCACGCgaccccacccctcccccacacagttgctagtagccaaggaggacacggaggataaaaaaaaaacacgatggactcttcagaagaggtcattatctcacgtcaccggacgccacaatcttctgaacatagccatactgagaaatacagagagaggtTTATGGAGCTGATAGCCTTAATTATCTTTGTATCAACTcctttggcaatggcttgaatgaaaCGGACggtcattaatatcaaaaagttacccactaaagctttaattaaacaaaaacagtagGGGCActtaaagaaaaatgtgttgtaGGCTAGGTGTCTTTCCCCTCCTCCCAGAGTTCAAAAGGAATGTGATTGTTTCAGCGGAAGAGAGACATGTCTTTATCAATGAGAGAAACAGATACATGCTTCTACATGGGTATTGAGATGCATGACAGAAGTGTACAGTAGTTGTAGGCACAATCCATTGCACACACTACACCACACACTTAGgcatacaaaacaaacacacagttgttttttttacatattttttacaTAGAAGTTTAACACTGCATGATCCTGGGAGGACATCAAaggtttttatctttttttgttttattctgtctttctttctgtttgaaCCACCCAGCCATCACAAAGCACTGTTACGTATCTCAACCACATCTTGTATGCAGTATTCGTATAAAAAGTTAATCCACAGTAATGGCAGAGATAAATAAATAGGAAAAATAGCACAACGTCAGGTCGCAGGTGTAACGCTATCACCTCGTGTTCAGATAGCACCTTTTTCTTCACACCTACAATGAGATTTTGAAATGcaacattttcatgtttttgccCTCCAATCACATCTGTGTAATTCCAGTGTTTGCAAGGAGTTAAATACAATTTAATATGGTTAAAGAGAGACCATCACTGTTTTTACAGAGCTAATAAATGATATCAGGCCTTAGTAGGGTAAATCTACACAGCTTTATCTTCCCAACACTGAGCCCTCAGTATGAATTTTATCACACGTGGAAATATACTGCTCATTTTAGTCAACATCCTTTGTTGTTGCAGTCTATCGATGATTGTCTCTAAGATTATCCAATTACAATACAACAGATTCTTCAATGAAACGAAATTGTTATGTCCATTTTTCCACCAAATCGTCCGTCTCATCGTTGTTACCACAAAAGTCTTTCAGCAACAAACGTCATTTAAACCCCATGTAGACTCGGTTCTGTCAACATACGTATAAGTGCAGTTTCTCTCTGTTGATATCAAAGCAAGGTTTCAAAAAGAGTTTCGAAATTGCACCATTGTCCACAGTTTTACAGCGATGCAGTTTCACATCCCCCACAGGTTCTGTGCTCGCACACAATTTGTCAGTTTCCGGGTGAAAATTGTGACTTCATACCAGCAACTGTTGTTGCAGAGCCAAGCATTTTCTTGACCAGGtccccctttttttatttatatcccATTTTCTTCTTGCCCTCCTCTTACTCCACACAGGTGTAGTTACAGGTTCACCAGACAGTCATTAGTAGTGTTACGGAGGAGATCTCACAGGACGAGCAGGTTACTGACACGTGAATAAATACTTATATGAAGGGAGTCACTCTGCTTCACCTCTGGATCCAAGAAATACACCATGTTCACTTTGTGTCCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206473 lncRNA downstream 26158 6120448 ~ 6120667 (-) True G152406
TU206470 lncRNA downstream 34890 6111732 ~ 6111935 (-) True G152403
TU206467 lncRNA downstream 36883 6109739 ~ 6109942 (-) True G152400
TU206417 lncRNA downstream 135974 6009247 ~ 6010851 (-) True G152362
TU206416 lncRNA downstream 151901 5991945 ~ 5994924 (-) False LOC120574101
TU206490 lncRNA upstream 6062 6154874 ~ 6155100 (-) True G152422
TU206523 lncRNA upstream 33596 6182408 ~ 6209012 (-) False G152441
TU206520 lncRNA upstream 77826 6226638 ~ 6228114 (-) False G152441
TU206554 lncRNA upstream 164000 6312812 ~ 6313399 (-) True G152462
TU206578 lncRNA upstream 189861 6338673 ~ 6339107 (-) True G152473
XM_039826322.1 mRNA downstream 64861 6073542 ~ 6081964 (-) False si:dkey-110g7.8
XM_039826321.1 mRNA downstream 64880 6073542 ~ 6081945 (-) True si:dkey-110g7.8
XM_039826320.1 mRNA downstream 93048 6044198 ~ 6053777 (-) True napsa
XM_039824187.1 mRNA downstream 138226 6006526 ~ 6008599 (-) True mpst
XM_039824184.1 mRNA downstream 142825 5995852 ~ 6004000 (-) True LOC120574102
XM_039823671.1 mRNA upstream 6487 6155299 ~ 6169024 (-) True csf2rb
XM_039823670.1 mRNA upstream 6487 6155299 ~ 6169018 (-) False csf2rb
XM_039823673.1 mRNA upstream 6487 6155299 ~ 6169018 (-) False csf2rb
XM_039823669.1 mRNA upstream 6487 6155299 ~ 6169018 (-) False csf2rb
XM_039823846.1 mRNA upstream 80551 6229363 ~ 6244419 (-) True baiap2l2a
TU206279 other downstream 533157 5574680 ~ 5613668 (-) False atp5mf
TU206278 other downstream 533157 5610556 ~ 5613668 (-) False atp5mf
TU206260 other downstream 563964 5580368 ~ 5582861 (-) False bud31
TU206270 other downstream 592575 5549318 ~ 5554250 (-) False top3a
TU206084 other downstream 682407 5461846 ~ 5464418 (-) True G152114
TU206522 other upstream 33596 6182408 ~ 6228114 (-) True G152441
TU206683 other upstream 570972 6719784 ~ 6720643 (-) True G152567
XR_005641918.1 other upstream 1933326 8082138 ~ 8100398 (-) False LOC120574885
TU207167 other upstream 2292367 8441179 ~ 8444381 (-) True G152952
TU207482 other upstream 2582585 8731397 ~ 8733019 (-) True G153172

Expression Profile