RNA id: TU207064


Basic Information

Item Value
RNA id TU207064
length 1645
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id G152863
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8087926 ~ 8092269 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCAATCATGAGGGAGAGCCAAGAGGAATGGAATTGTCAGATTGTCACACCACAAACTGCCTTTTACTATTGAAACCTTTCAATGGGAGGAGAAGTCTCAGTGCTCTAAACCACCATCTGTTCCAAGGCAGGAGATCCTTGGAGGTAGGACCATGTGTACCACGATGGTGGTCCTGACCACCATCGCTCTCATCCTGAGGCAGAGATTCTCCAGCAAAATCAAACCGCAGAAAGAGCCCATTGAGAAAGACGTGCCATACATGAAGAGCAATGGAGCAGCAGAAACCCACAAATGACAACAGTGAGCATCACAAgACATGATAGGCCATCATCTCAAGACTGGTGAGCATCAGATTTATCTGCACACACAGCTCACGCCAAGACTCCCACCaggattttgaaataaaaacaatgaagcCTGTTTTGATCATCCTATCTGTCCTACAGATGCTCTCATCACTGGAACAGGACACAGCAACTGAGTGAACTCCAGTTTGGAAAATGAAGCCTGACATATGCTGCTTATTCGTcatgaaaaactgaatttacaATAATGTCACTTCAAAGTTGGTTATATGATCAGGGtacaaagtgacaaaacatgTTATGTGCCTCTGCATAAAATCAAGCAGTAATCATTTTGTTTGATTTCAtgttttgcttgttttaaaaaaaataaaaatgtaatgaactgttttaaatgtatgtatgaGGAGAGGATAAGCTTTGACTGTATGCATGTTAAATATTACCTTCTCTTAAGATCTCATAAGTGACCTAATTTCTTCAGAAAAAGGGGCTAAAGTCATGTGTTGTATTGTAAATGGCAGGTACGTCCATTCTGTTAATCCCTTAAAGGTTTATGTTCTCACGGGAGAATCCCAAGGCTTACATAAAGCAATGGAATGGCATCTATGTGCCGTTGTGTACTTCTGAATGCCAATGAAGATTGTCTCTCGCATGCACAAAGAATAACTGTGCTGAATTTGCTGATGATTTATGTCAAAGGCATACATCTTCTAATAATAACATTTTTGTCCACTTCATTCATCTGAGTTTGAAATGGCCAGTTTCATTTCTTGACAATTCATATTTGGTTGCATACAGCTTTATTATCATCCTGTGCTGTAAGCTATGTCTTTTGCCTCCAAAGAGTAAAACCATTTTTTTGACATTGCATATGATATGTAGGCTGACATTACAGTAAATAGTGTTCTCCTTCAAAGTATACATTCATTTTGCCTGCACACTTTGCTTCACAATCAATTGTCATCTCTTAaaacacaattattatttttccgttATTTCTGCTTTGATCAAGTAAAAGGGTCAATTTCATGCTTTAAGGTATTCAATGCACTCTGAAAAAAACAGCTTTAATATTGATATAGGCCTAGAGCATGAACAAACCCTCCATCATCAGTtatctacaaaataaatcaatatattcTTGCATGCCTGGCAAGACATTTTAAACAGAGGTTGTCTACTTGTTCACTGTGTTAATGGAACAAATCTCTGTTTTGACAGAATGATCAATGATGCTGGCATGCATGTCTAATCCCAACTCTGACATGCCTGAAAAAGGCTGAAGACTCATGAGGAATTGTGTAAACCTAACTTTGAGCAATGGGCTTACTGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641917.1 lncRNA downstream 21646 8063001 ~ 8066280 (-) True LOC120574882
TU207007 lncRNA downstream 462848 7570643 ~ 7625078 (-) False grin2aa
TU207003 lncRNA downstream 462932 7569718 ~ 7624994 (-) False grin2aa
TU206913 lncRNA downstream 609312 7478319 ~ 7478614 (-) True G152756
TU206905 lncRNA downstream 718073 7367794 ~ 7369853 (-) True G152748
TU207139 lncRNA upstream 199631 8291900 ~ 8292215 (-) True G152924
TU207140 lncRNA upstream 200769 8293038 ~ 8293257 (-) True G152925
TU207389 lncRNA upstream 357753 8450022 ~ 8454668 (-) True G153106
TU207394 lncRNA upstream 370910 8463179 ~ 8558912 (-) True G153111
TU207395 lncRNA upstream 376035 8468304 ~ 8470293 (-) True G153112
XM_039825380.1 mRNA downstream 1983 8073505 ~ 8085943 (-) False LOC120574884
XM_039825384.1 mRNA upstream 783 8093052 ~ 8100398 (-) True LOC120574885
XM_039825025.1 mRNA upstream 22705 8114974 ~ 8115999 (-) True rasd4
XM_039823725.1 mRNA upstream 45315 8137584 ~ 8141831 (-) False LOC120573855
XM_039823723.1 mRNA upstream 45315 8137584 ~ 8141827 (-) True LOC120573855
XM_039823722.1 mRNA upstream 45318 8137587 ~ 8141833 (-) False LOC120573855
TU206683 other downstream 1367283 6719784 ~ 6720643 (-) True G152567
TU206522 other downstream 1859812 6182408 ~ 6228114 (-) True G152441
TU206279 other downstream 2474258 5574680 ~ 5613668 (-) False atp5mf
TU207167 other upstream 348910 8441179 ~ 8444381 (-) True G152952
TU207482 other upstream 639128 8731397 ~ 8733019 (-) True G153172
TU207525 other upstream 720073 8812342 ~ 8816276 (-) False natd1
TU207545 other upstream 761491 8853760 ~ 8856957 (-) True tufm
TU207546 other upstream 761491 8853760 ~ 8857571 (-) False tufm

Expression Profile