RNA id: TU207139


Basic Information

Item Value
RNA id TU207139
length 316
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G152924
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8291900 ~ 8292215 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agaaaatgtgtttagacttttggagacttgagaagaggttttgctctctgtgtgtcagttcaaataattgtgctatgcatgtcattttagtgtgttagcaattggaaaaaactgtaaacactctggcccagcccacaaatacactccttccaaaacagtcttaaagaatgcaaagtctgcaacaaatttgtacaataactcactaaaagagtaaagaaaagttatgtgaaatgaaaagaaaaactgtaaaagaaaagcaatatgaaatgaaaagaatgtgtggaatgaaaatgaaatgtaaatgtaaagacaagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207058 lncRNA downstream 199631 8087926 ~ 8092269 (-) False G152863
TU207059 lncRNA downstream 199631 8087926 ~ 8092269 (-) False G152863
TU207063 lncRNA downstream 199631 8087926 ~ 8092269 (-) False G152863
TU207064 lncRNA downstream 199631 8087926 ~ 8092269 (-) True G152863
XR_005641917.1 lncRNA downstream 225620 8063001 ~ 8066280 (-) True LOC120574882
TU207140 lncRNA upstream 823 8293038 ~ 8293257 (-) True G152925
TU207389 lncRNA upstream 157807 8450022 ~ 8454668 (-) True G153106
TU207394 lncRNA upstream 170964 8463179 ~ 8558912 (-) True G153111
TU207395 lncRNA upstream 176089 8468304 ~ 8470293 (-) True G153112
TU207400 lncRNA upstream 197841 8490056 ~ 8537956 (-) True G153116
XM_039823722.1 mRNA downstream 150067 8137587 ~ 8141833 (-) False LOC120573855
XM_039823725.1 mRNA downstream 150069 8137584 ~ 8141831 (-) False LOC120573855
XM_039823723.1 mRNA downstream 150073 8137584 ~ 8141827 (-) True LOC120573855
XM_039825025.1 mRNA downstream 175901 8114974 ~ 8115999 (-) True rasd4
XM_039825384.1 mRNA downstream 191502 8093052 ~ 8100398 (-) True LOC120574885
XM_039826258.1 mRNA upstream 5523 8297738 ~ 8302271 (-) True nptx1l
XM_039826280.1 mRNA upstream 182265 8474480 ~ 8484692 (-) True cdr2l
XM_039825717.1 mRNA upstream 196164 8488379 ~ 8504839 (-) False recql5
XM_039825715.1 mRNA upstream 196164 8488379 ~ 8504839 (-) False recql5
XM_039825716.1 mRNA upstream 196164 8488379 ~ 8504819 (-) True recql5
XR_005641918.1 other downstream 191502 8082138 ~ 8100398 (-) False LOC120574885
TU206683 other downstream 1571257 6719784 ~ 6720643 (-) True G152567
TU206522 other downstream 2063786 6182408 ~ 6228114 (-) True G152441
TU206279 other downstream 2678232 5574680 ~ 5613668 (-) False atp5mf
TU207167 other upstream 148964 8441179 ~ 8444381 (-) True G152952
TU207482 other upstream 439182 8731397 ~ 8733019 (-) True G153172
TU207525 other upstream 520127 8812342 ~ 8816276 (-) False natd1
TU207545 other upstream 561545 8853760 ~ 8856957 (-) True tufm
TU207546 other upstream 561545 8853760 ~ 8857571 (-) False tufm

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00022072 False 7355 lncRNA 0.42 3 NC_007127.7 354846 ~ 367144 (-)