RNA id: TU207394


Basic Information

Item Value
RNA id TU207394
length 5202
lncRNA type read_through
GC content 0.46
exon number 5
gene id G153111
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8463179 ~ 8558912 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTAGGAAAACACTCCCTCACTGATGCATTCAGTGGCTCTAATGTCATCATTAGCATTTTGTGTAGTGTACTACAGCTGGAGGAAAAGGAAACCTGAAAATAAGAGCTGCAGAAACTTATTCTAACTTTGACTCACCTTCTCAGAGTTGATGCTCAGCTTTTTCTCGACGTGCACGTGGATTTCTCCGTTACTCTCCGGGACCGGCGTGGACTCCCTGGGTGTCTCCTCCCGCttctcctcatcctcatcctcgTCGAAGGGTAACGGGATACCGTCAGTGACATACTCCTTCAGACACTTCATGTTGTGTTTCTTCAGCAGCTGCTCCGTGTCCGGGTCCACCACTACGAGCTCCAGCCGGCCCACGGTGGCTCGTATCCGGGACACGACCTGCTGGTGGCTCTCGTTCTCCACGTCCTCCCCGTTGACGAACACCAGCCGGTCTCCGGCGCGGAGCCTCGAGGTTTCAGCCGGGCTGTCGGGCTCCACTAACCGGATAAACTGCCCCGTCTTGCCTTTCTCCCCGTGGAGGTGGAAGCCGTAGCCGTTCTCCCCCTTCTCCAGCGTGCAGAGCCGGGGGCGCAGATGCTGGCTTTTGCTCGGCATGGTATATAGGCTTCACTCGCCTTCACACACTGCTTCTGAACTGTGTCTCAAACTGTTGTTTAAAGTGGAAATGACCACAAGACCCGCTCCAGGATGCTGCtggggaggggtgtgtgtgtgtgtgaatgagtggtaccccttaaaaaaacaaattccaacccCCGCCCTCTTGTTGGGGAGATTAGTCCGTGAGAAACGGTGCTGGTGTTCCACTTTCACACACACGAGTCCAAGTCTGACTTGATCCTCACCCTTGTGTAAATCCTCACTGTGACTCCTGCTATCAGACAGTGGAGGTCCTGACCCGAGGACTGAATAGAGGCCGATTAGAGTCACACAGCAGCTCCCTCTCACTGTGCGAGAAAAGTAGAAAAGCCACTCAGGAAGAGGGAGGCAGAAGGCTGAGGAAGATGTCGATGGAGGATGgcgaggggagggggaggggatcAGTCTTTCCAATCTTTCTTGATAGTGAGGCACCAATCCCAGGAGAGATGATCGTGTTTGTCGTCATCGGTGAACTTGGACTTGATGGTGTAGGTGCCGCGGGCCAGCATCCCTTTGGGCGCCTCCTCCATGGTGGTGAGGAACTCGTATTCCTCGTTCGGTCTGGGGCCGTAGCTGCCGACCATGTAGTCCGACTTGTCAAGTTTTACTCCTTTCCTGAAGGTTTGCTGAGTGTACTTCAGGCCTGACACAATTTCCTTGTTGAcCTTGAAGTTGATCTTTATTCTGTATTCGACTCCCTCCTTCAGCACAAATGGGTTCTTCTTGAAGTTTTCCAGGTCTCCTGGAAGGGAAAGCAGCacagcatgaaaagaaaagtcaaGCAAGAGCGAAGACTGTCCAGATATATACTTCAAGATCAGTTTGGAACAGCATGAACGCATTTTACACAGTCTAAAACATATAAACTAAAGTTTAATACACACGTAGGGATTTTATGGTTACGTTTTACCGGAGGAAAAGAAATCCCATTCTCCAGCAAAGTTGTATTTTGATTTCTCAACACGCTGTAGTAATGATACTGGCCACCAGGTGGCACAGTGAGCCAAGCACCGTTGCTCTGTTGGAGCTCTGTGTGACCAGGAAATGGCTCATTAACCCACTTACACAGGATTCATGTCATTACTAATGCCATTTGTACACAAGGACGGGAGTGATTACAGTTTATAATTAATGTTACTACGAGCCAATTCTTCCAGCGTGTCTGCTGCGAGGACAGACAAGCGCCTACATGTGGGCTTCTGTCAATCTTTCAGATGGTAAAAGATACATGATCCCATGTTCACTGTAAAAAGCTGCTGTTGGGTTTTGTCCCGATTCCCAGCCTCACACAGACCACGTTATGTGCGCCACTTACCCAGCAGGTCAAGGACTAGAGGGCCCGGGGCCGTTTCACATAACAGAGTCATTCGCGTCACCTGGACGTTGGGGGCGCTGGGATCtttgagagggagagggagagaacggGCACAAATACAAAATTAGGATCAATTCATAGCACCTGAGAAAAATGATGACAGAATCCAATTGTCCAATCCAAATTGAAGTACCTCATCCTCCattctttttcatttaaatggtTTTGCGTTCAAATATTTAATGagtatttttcttaaaatggtCAATCACACACCTTGCTAGTTcgatttttaaatagtttgatATGTGTGTGAAGTTGTAATtctaacaataaaaaaacacttcagtACTTTCGTCCTTCCTCCGCCCCACAGTAGTAAACTGTCTCAGGGGACAGGAAGGCCCTCTCTCTTCCACTCAATGCGACCAGGAGGGCTACATTTGCAACCTTCTGAAAACGGGCCGTTAACAGCACAGCTCTGATAAACCCTGGGCAGTGACCAGAGCCCTTTCCCACCGCTGAGGGGTTTTCATGCGGGCTTCAGGATCGGCTTCCATGCAAATTCAATATATTTCTTTATTgatttgaatttattttcaatactTCAGCGAGTGATAATGGTCGGATAATCTACTCTTCACCACAAAAGCTAATTTAGCAAAAACTAGCCAATACTGAGTAACTGGATACTGGTCAGCTACCACACAGAATATGTAGTCATGCTATTTGAAAGTAACAACATCCATATGATGACAATTTTCAGActgatcattttttttttcaatttcaaatttcatgttgctttattggcatgacaaaaaatacatctgtgttgcaaTGATCATTTCCTGTACTTTTTATGAGAGaagcgagagcgagagagagagagaagcgagagcgagagagagcgagagagagagaaagagatattgGCTGTTTTGCTTATGCTTGTCGTTAGAAAAGTTGCTGAGGGGATCACCAACCTGCAACCACAGCAACGTTGCCCAGCAGTGTCTCCTTGTACTTGCGCAGGCTTTCATCATCCTGGTCCAGCGCCTGGATCTCCTGTAAGCTCTTCTGGGCGGGAGGTTTGTAGTTGACGGAGCTTTCGTCAGACTCGTTGGCTGCTGCGAGCGCGGCCAGCTGCTCTGGTGTAGGCTCCTGCTCTGCCATAGTATGCTAATCACAGCAAGAGAGTGACCGCAGAGAGGTTAGAGATCAGTGAAAATAAAGTAACAAGGACTGGCAGCAGGACCGCTTACCCTTTTACTCTCTACTTTTGCTGTAATGAAACTGGACCTACATCCTACATGTGCAGCAGGGCAGCCCGTGGTTATTATTAGACATCCGGCTGCTGGATGATTGTTACGGATTACTTATCCAGGAGGGAAACCTCACTGAACTTTGACCTTTGTaaagcagcagttcatgtagaaagaAACGCCACAAATCACATAATTTCTCTTAAAACAATATTTCCACCTGGTACTAAAATCCGATCCGAGggatccgatcacaagtggaccCATTTTTCACAAACCACATATGTCCCAAACATTCTGACAAGGACAAATCAGGAGAATATTTATCTTGTTTGTGACCAGTTTCTGTCTCAGGGACAAACTCTTGCATGACCTGGCAACACAGATACGCAAATGTTAACTAGGAGAATGGCCTAACAAAACTTATTTGGGTAATGCTAAATATGCCTTTTATCGGTGTACATATCTAATGtttgcaaaagaaaataaattatgcaAATACATCTTTTGATCCATGCACGCACACAACGATCGCTACACTTTTAAATGGGGCCACGcccatttaggagacaggaagtgtgtaccgtttcataccattggTGCAGGCCCCGGTGCCCGTCAGTAGACAAGGACAAAGACTGTAGGCAGCACTTTTTCATTAGTCATCGCAAGTTTCTAATGTATGATTTATGTGAGAGTAACAActgaaatgtacacacacacacggtatgTGCAAACGGTGTGTTTGTacgtgtttatttgcatatagaGCGGGGAAGGGAGATCCAATCAGAAGTGGTCACTCAAGACGCATTTGGAGACACATTCCTACATACCTACTTAAAGCTGTCCACTAGTGATAGGACCACTCAGATAGGATTTTAATAACATGTGAAAATGGGGCCTTACTCTTTGTTTGCGGTTTATTTTTCCTGATATTTTCAGTGTGCTTAAGTTCGGAGATACTGCCAATAAGTGGAGCATCATGGAAGTATGAAAATGTTTCAAAACACAGCGACAACTCTTAACCTTGTCACACAGAGTGACGAGGTTAAGGATGACGAACCACAGACCTGGCTGTGAATAGTTTAGACCACAGATAGCAGGCTCACTTGATGACAAAGGATTTCTCGgtaaaatgaagtgtttacAACAAGCTCTGTGTGGATCATCAAGGCCAACATTACCCGGTATCATTATTTTTGCCAAGAGacaagtagggttgggcatcgagaaccgattcctaatcggaatcgtttcaaaaattacgattccatggtttcaaatctgatcataggttccaaattaagttttggtttccgtagcagccaggcgcttgttgttttgcagccgtgcagcacagtaagcggagctctagtgtggctttattttgcattgtaaaagctgtaaaactgcaacccacctaagaatcaaaataaaactttcctcttatttgtgaaataagcatctaacccgtttcaactccaccactcaaagaatcggaatcgagaatcgataagaaccggaatcgaaaggaagaatcggaattggaatcagaatcattaaaatccaaacgaaGCCCATCCCTAGAGACAAGGCAGTTTTATTGCGTTTTATGCTTAGACATAACCGTATGTGagcgcacaaaaaaaaaaaacacgaccaCAGACGAGAGCCAGGACACGTGTCCATCTGGCCCGCTCCACAGCGGTGACATACAGCACAGGATGGTGGTCTATTATTATCTGAGCTCCAGGCTTCTTCCCTCACTTGTCTCTCCTCCACCACAGACTGCTGGcagacaacagaaaaacagcagTGCTAAATGGGGCAATCTACACCCAGCTGCACCGTCACAGCTGATTAGAAGAGAGGACGCTGATCCTGAGCAGGGAATGGCACGACAACATAGTGAGATCATCTTCATTTTTGTGAGAACATAGGAGGTGCAACAAAACTCAATTGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207389 lncRNA downstream 8511 8450022 ~ 8454668 (-) True G153106
TU207140 lncRNA downstream 169922 8293038 ~ 8293257 (-) True G152925
TU207139 lncRNA downstream 170964 8291900 ~ 8292215 (-) True G152924
TU207059 lncRNA downstream 370910 8087926 ~ 8092269 (-) False G152863
TU207413 lncRNA upstream 27927 8586839 ~ 8588188 (-) False G153124
TU207421 lncRNA upstream 53365 8612277 ~ 8616112 (-) True G153130
TU207447 lncRNA upstream 85872 8644784 ~ 8645025 (-) True G153142
TU207448 lncRNA upstream 88171 8647083 ~ 8647291 (-) True G153143
TU207443 lncRNA upstream 100699 8659611 ~ 8684753 (-) False G153139
XM_039826258.1 mRNA downstream 160908 8297738 ~ 8302271 (-) True nptx1l
XM_039823722.1 mRNA downstream 321346 8137587 ~ 8141833 (-) False LOC120573855
XM_039823725.1 mRNA downstream 321348 8137584 ~ 8141831 (-) False LOC120573855
XM_039823723.1 mRNA downstream 321352 8137584 ~ 8141827 (-) True LOC120573855
XM_039825025.1 mRNA downstream 347180 8114974 ~ 8115999 (-) True rasd4
XM_039824671.1 mRNA upstream 68171 8627083 ~ 8640435 (-) False rabep2
XM_039824670.1 mRNA upstream 68171 8627083 ~ 8640433 (-) True rabep2
XM_039825844.1 mRNA upstream 92720 8651632 ~ 8659219 (-) True si:ch211-11k18.4
XM_039825208.1 mRNA upstream 101390 8660302 ~ 8665654 (-) True nudt9
XM_039824521.1 mRNA upstream 180719 8739631 ~ 8768700 (-) True mapk8ip3
TU207167 other downstream 18798 8441179 ~ 8444381 (-) True G152952
XR_005641918.1 other downstream 362781 8082138 ~ 8100398 (-) False LOC120574885
TU206683 other downstream 1742536 6719784 ~ 6720643 (-) True G152567
TU206522 other downstream 2235065 6182408 ~ 6228114 (-) True G152441
TU206278 other downstream 2849511 5610556 ~ 5613668 (-) False atp5mf
TU207482 other upstream 172485 8731397 ~ 8733019 (-) True G153172
TU207525 other upstream 253430 8812342 ~ 8816276 (-) False natd1
TU207545 other upstream 294848 8853760 ~ 8856957 (-) True tufm
TU207546 other upstream 294848 8853760 ~ 8857571 (-) False tufm
TU207547 other upstream 294848 8853760 ~ 8856957 (-) False tufm

Expression Profile