RNA id: TU207400


Basic Information

Item Value
RNA id TU207400
length 2033
lncRNA type read_through
GC content 0.38
exon number 2
gene id G153116
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8490056 ~ 8537956 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGaagtttttaattgtttaacagagcactggagatgaactgacaacatacacACTTCCTCTCAAACAGTATAGAAAAATAACATTGGGTTCCGCTGATTACTCTTGCTCTCTCATTAGCAATAAAACGGGGGCTTCACTGAAGCAACTGTACTGTGCAAGGTAAACAAGGTCACTTGAAAACTCATATGGTGGCCAACTATTATTATTTAAGAACATTTAAAACTAGTTAAAAAATGCAACCTAAGATACAGACAGGGGGGTCTCACTATCCTCTGAAAAGGCATTCATTGCACATCTCTGGAAGCTAACATCCCGTAGTAAACAATCCATCGTTGCACTAAGTAAAGGCAGCTTAGATTCTCTTGATCAggctaaaacacaaacataaaacatacagtgTACTGTCTAACATTTTTGGTTGGTGGACTTAAAGAGCTGAACTGAAATGCACGGTTGGAATAGAAATGAGAACAATAACCAACCTGTGAAGCAAAcagagcacacaaacacacagtgacaATACTGCATACACGCTGATACACAGGAGGGACAACAGTGTGTCTAACCAAGTTTACAATTGgaattttaaagaaatgttctacattttgggaaatatacttATTGGTTGGCTTGTTGAGCCTTAGAAGAGAAGACGGATACCACTTTCATAGTTTGTGCGGTCATTTTGTGGTTACctgcagcagccagttagcttagcataaaaaattggaaacagctagcctggctctgtctaggAGTAACTAAATCCACCTAACGTTACCAGtatctctaaagctcactaacgAACACGCAATATGTTGCTTGTTTAAAGTTACAATAAcagaagtgtaaaaacaactaATTTAACGGTTATGGGTCGGGCTAGCATTATTTCTCGGTCGGGActagttgccaggcaaccagcggaGACTCCCGGAGGTAACTAGAAGAAATAGTCCACATCAACAAGTGTAAAAACGAcgatttgttgtttttacacctcGATTCttctaaaggttaaaaaaaaaaaaaaaaaaactgagtttAAAAAGGTGCTGGTAGACTGATTTAGTTACCTTTGGAAGCCAGGCTAGACATTCCCTTTGTttacagtctttgtgctaagctaggttagccGGCCGTAGCCTCGTATTTACTCTTATAAAACATGACAGTAGTATCAAGCTTCTCAAAATTTCTTGCTAAATTGGCTTTAGTTCAAAAGAATTCTAAGGGGCCAAAGAGCACATCACATTTTGTCAGATTTCACATTGACAGTTCATTCATAACCTTGAAAAGCTGGCAAAACAATCTCAAGCCACCTGCTGCAGGTTTTTGTCAACTGTagttgttttgagtgagattGTTTTGTTGCGTATTAAGGGAATTTTGAATGTAACTTGGCTATCTGCAGCCTTGATGCTGCGGTTGTCTCTGCACTTCCTTTGATCAGATAAACAACTCAGAGTGgctttttcttttgctgcaACAATGGGCATTAAAGACAACTTAACACTTTACAGCCAGTTTAGGGAActaacagacaaaacaaatacaataaaaaaaaattcatgttCAAATGATATGTCACAGTAAACCGAACTAAACATGAAATACTCTCTCTACACTCTCTTTCCTTATCTTTTCCTAATACAGGTTACAAGTCTCAGTATTTAGTGATATGTCTGTGCAGGGGAGTGATGGTGCAAGTATTTGCTTTAGAGTCTATGGAAATGCAAGTGATGTGACTCATGATGTCTGCTCCTCGCACTATAACCAAGTGACCTCTCTGTAACATTATAGTCTTACAGTAAAGTGCACTTCATCTGTCTGTTCCTTATGCATACATACTAATGCTTCAAAATAAGCACAATAACATGATTTAGAGGTTCCACTCTCCCTTGAAATGAAGAGGAGCCTGTTGTTGAGTTTAGACAACTGCTTCCCGATTCTTTCAAAGCAGAGAAAAACTGAACACTGTGCGCCCAAACAGAAGTCAAACATGCACagagggtttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207395 lncRNA downstream 19763 8468304 ~ 8470293 (-) True G153112
TU207389 lncRNA downstream 35388 8450022 ~ 8454668 (-) True G153106
TU207140 lncRNA downstream 196799 8293038 ~ 8293257 (-) True G152925
TU207139 lncRNA downstream 197841 8291900 ~ 8292215 (-) True G152924
TU207063 lncRNA downstream 397787 8087926 ~ 8092269 (-) False G152863
TU207409 lncRNA upstream 2422 8540378 ~ 8588188 (-) False G153124
TU207415 lncRNA upstream 2422 8540378 ~ 8588188 (-) False G153124
TU207418 lncRNA upstream 13340 8551296 ~ 8611997 (-) True G153127
TU207412 lncRNA upstream 16552 8554508 ~ 8588188 (-) True G153124
TU207413 lncRNA upstream 48883 8586839 ~ 8588188 (-) False G153124
XM_039826280.1 mRNA downstream 5364 8474480 ~ 8484692 (-) True cdr2l
XM_039826258.1 mRNA downstream 187785 8297738 ~ 8302271 (-) True nptx1l
XM_039823722.1 mRNA downstream 348223 8137587 ~ 8141833 (-) False LOC120573855
XM_039823725.1 mRNA downstream 348225 8137584 ~ 8141831 (-) False LOC120573855
XM_039823723.1 mRNA downstream 348229 8137584 ~ 8141827 (-) True LOC120573855
XM_039824671.1 mRNA upstream 89127 8627083 ~ 8640435 (-) False rabep2
XM_039824670.1 mRNA upstream 89127 8627083 ~ 8640433 (-) True rabep2
XM_039825844.1 mRNA upstream 113676 8651632 ~ 8659219 (-) True si:ch211-11k18.4
XM_039825208.1 mRNA upstream 122346 8660302 ~ 8665654 (-) True nudt9
XM_039824521.1 mRNA upstream 201675 8739631 ~ 8768700 (-) True mapk8ip3
TU207167 other downstream 45675 8441179 ~ 8444381 (-) True G152952
XR_005641918.1 other downstream 389658 8082138 ~ 8100398 (-) False LOC120574885
TU206683 other downstream 1769413 6719784 ~ 6720643 (-) True G152567
TU206522 other downstream 2261942 6182408 ~ 6228114 (-) True G152441
TU206278 other downstream 2876388 5610556 ~ 5613668 (-) False atp5mf
TU207482 other upstream 193441 8731397 ~ 8733019 (-) True G153172
TU207525 other upstream 274386 8812342 ~ 8816276 (-) False natd1
TU207545 other upstream 315804 8853760 ~ 8856957 (-) True tufm
TU207546 other upstream 315804 8853760 ~ 8857571 (-) False tufm
TU207547 other upstream 315804 8853760 ~ 8856957 (-) False tufm

Expression Profile