RNA id: TU207653



Basic Information


Item Value
RNA id TU207653
length 627
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G153275
representative True

Chromosome Information


Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9064996 ~ 9085687 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GCAACATTTATTTGAAAAAGTCAGCACACTTCTCAAGCTGTTAGACAATGTGACGTAGACAGATTGAAACACAATATGACAAACAATATTAAATTGACCGTTTTACAATCACAAAGACAGGTTCTCATGGCAGagagtacacacagagacagaacaaCACAATATGACAAACAATAGTAAATTGACCGTTTTACAATCACAAAGACAGGTTCTCATGGCAGagagtacacacagagacagaacaaCACATTAGCACAAACTGCCACATTTAAAGCTGAATCTACTATTTCTTACATTCAATGGAGTTACTCATGGCCTTAGACACATCTTTGGATTGAATAGGCTTTTCACCTCTACCAGGCCATACGTGGCAGGAGAACATGGTGAAGTTGTTCCACTTGTCTTTGGTGGTCGTGTAAATACTTGCAACTGAGTAGCCTTTTTCGGTCTTCTCTGGGGGGAAGTTAATGCCATCAGTATAGATAGGGGTGTTTTTTCCAATATGTTCTGACCAGGCGATGTAGTAATCCTGCTGCTCTGGATTGGAAACCAGGCACACCAGAGTGACCTCATCGATGATGTCCTCATCTGGGAGGATGTGGACTGTTACTTTTGGCTCGCTCCCAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU207565 lncRNA downstream 161173 8895786 ~ 8903823 (-) False zgc:55558
TU207566 lncRNA downstream 161173 8895786 ~ 8903823 (-) False zgc:55558
TU207568 lncRNA downstream 161173 8895786 ~ 8903823 (-) False zgc:55558
TU207562 lncRNA downstream 166367 8895786 ~ 8898629 (-) False zgc:55558
TU207439 lncRNA downstream 345096 8718193 ~ 8719900 (-) False G153137
TU207884 lncRNA upstream 101563 9187250 ~ 9194175 (-) False LOC120574599
TU207886 lncRNA upstream 101563 9187250 ~ 9204006 (-) False LOC120574599
TU207892 lncRNA upstream 111071 9196758 ~ 9203859 (-) True G153455
TU207893 lncRNA upstream 113971 9199658 ~ 9501467 (-) True G153456
TU207900 lncRNA upstream 131382 9217069 ~ 9224320 (-) False LOC120574662
XM_039825003.1 mRNA downstream 16873 9043413 ~ 9048123 (-) True cabp5b
XM_039825617.1 mRNA downstream 28168 9020086 ~ 9036828 (-) False sez6l2
XM_039825615.1 mRNA downstream 28411 9020086 ~ 9036585 (-) True sez6l2
XM_039825761.1 mRNA downstream 46256 9011223 ~ 9018740 (-) True kctd13
XM_039825590.1 mRNA downstream 54065 9003265 ~ 9010931 (-) True hirip3
XM_039824654.1 mRNA upstream 258014 9343701 ~ 9345172 (-) True LOC120574364
XM_039824655.1 mRNA upstream 305878 9391565 ~ 9406804 (-) True LOC120574368
XM_039825001.1 mRNA upstream 611956 9697643 ~ 9739305 (-) True LOC120574579
XM_039824129.1 mRNA upstream 975599 10061286 ~ 10149481 (-) False cacna1aa
XM_039824126.1 mRNA upstream 975599 10061286 ~ 10149481 (-) False cacna1aa
TU207564 other downstream 157334 8904081 ~ 8907662 (-) False zgc:55558
TU207570 other downstream 160656 8895786 ~ 8904340 (-) False zgc:55558
TU207546 other downstream 207425 8853760 ~ 8857571 (-) False tufm
TU207545 other downstream 208039 8853760 ~ 8856957 (-) True tufm
unassigned_transcript_737 other upstream 103697 9189384 ~ 9190066 (-) True LOC120574343
unassigned_transcript_738 other upstream 106299 9191986 ~ 9192402 (-) True LOC120574654
unassigned_transcript_739 other upstream 107931 9193618 ~ 9194157 (-) True LOC120574599
unassigned_transcript_740 other upstream 134854 9220541 ~ 9221072 (-) True LOC120574348
TU207903 other upstream 134930 9220617 ~ 9221090 (-) False LOC120574348

Expression Profile