RNA id: TU207910


Basic Information

Item Value
RNA id TU207910
length 431
RNA type TUCP
GC content 0.48
exon number 2
gene id LOC120574374
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9438974 ~ 9439493 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctgagtgcagagaggaggacagagaacagtggaaacacagtttaacatgatggactataggacaggactgctgcttttaactgtctgctgggcaggtgttgatggtcagactctgacagaatctgaaccagcgattaaaagacctggagaatcccacagattgacctgtacaacatctggattCACATTCAGCAGCTACGCTAtgaactgggtcagacaggctcctggaaaaggactggagtggattgcTTTTATACACACAGGCAGTTCTGATCTCTATTACTCCCAGTCAGTCCAGGGGAGATTCACCATCTCCAGAGATGACTCCAGCAGTAAACtctatctgcagatgaacagtctgaagaccgAGGACACAGCAGTGTATTACTGTGCCCGAGAGACACAGTGAGAGACGATAATAGGAGAGTCAT

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207976 lncRNA downstream 79124 9359528 ~ 9359850 (-) True G153527
TU207935 lncRNA downstream 101108 9246355 ~ 9337866 (-) False LOC120574352
TU207951 lncRNA downstream 135627 9248397 ~ 9303347 (-) True G153508
TU207940 lncRNA downstream 165860 9249829 ~ 9273114 (-) False LOC120574652
TU207952 lncRNA downstream 173607 9258210 ~ 9265367 (-) True G153509
TU207998 lncRNA upstream 102625 9542118 ~ 9548305 (-) True G153539
TU207921 lncRNA upstream 163364 9602857 ~ 9603106 (-) True G153481
TU208072 lncRNA upstream 312766 9752259 ~ 9798267 (-) True G153588
TU208076 lncRNA upstream 339796 9779289 ~ 9782563 (-) True G153591
TU208095 lncRNA upstream 354599 9794092 ~ 9842982 (-) True G153597
XM_039824655.1 mRNA downstream 32170 9391565 ~ 9406804 (-) True LOC120574368
XM_039824654.1 mRNA downstream 93802 9343701 ~ 9345172 (-) True LOC120574364
XM_039825003.1 mRNA downstream 390851 9043413 ~ 9048123 (-) True cabp5b
XM_039825617.1 mRNA downstream 402146 9020086 ~ 9036828 (-) False sez6l2
XM_039825001.1 mRNA upstream 258150 9697643 ~ 9739305 (-) True LOC120574579
XM_039824129.1 mRNA upstream 621793 10061286 ~ 10149481 (-) False cacna1aa
XM_039824126.1 mRNA upstream 621793 10061286 ~ 10149481 (-) False cacna1aa
XM_039824122.1 mRNA upstream 621793 10061286 ~ 10149481 (-) False cacna1aa
XM_039824120.1 mRNA upstream 621793 10061286 ~ 10149481 (-) False cacna1aa
unassigned_transcript_766 other downstream 2108 9435292 ~ 9436866 (-) True LOC120574373
TU207913 other downstream 5973 9428183 ~ 9433001 (-) True G153473
unassigned_transcript_765 other downstream 13928 9424509 ~ 9425046 (-) True LOC120574659
unassigned_transcript_764 other downstream 18276 9420152 ~ 9420698 (-) True LOC120574660
unassigned_transcript_763 other downstream 30492 9407854 ~ 9408482 (-) True LOC120574369
unassigned_transcript_768 other upstream 1071 9440564 ~ 9441100 (-) True LOC120574375
unassigned_transcript_769 other upstream 2754 9442247 ~ 9442797 (-) True LOC120574607
unassigned_transcript_770 other upstream 3750 9443243 ~ 9443724 (-) True LOC120574376
TU207917 other upstream 7390 9446883 ~ 9447372 (-) True LOC120574377
unassigned_transcript_771 other upstream 7412 9446905 ~ 9455662 (-) False LOC120574377

Expression Profile