RNA id: TU207919



Basic Information


Item Value
RNA id TU207919
length 429
RNA type TUCP
GC content 0.47
exon number 2
gene id LOC120574579
representative False

Chromosome Information


Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9697643 ~ 9739305 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


agagaacagtggacacacagtttaacatgatggactataggacaggactgctgcttttaactctctgctgggcaggtgttgatggtcagactctgacagaatctgaaccagcgattaaaagacctggagaatctcacagattgacctgtacagCCTCTGGGTTCAATTTAGGCAGCTATCACATGGCCtggatcagacaggctcctggaaaaggactggagtggattgcCTGGAATAGTAACGGTGGCACAAAAtactactctcagtcagtccaaggccggtttaccatctccagagatgacagcagacagcagctgtatctgcagatgaacagtctgaagactgaagattctgctgtttattattgtgctcgagagccacagtgactggagttggttgagcagctgtacaaaatccTACAGTACTCAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU207938 lncRNA downstream 22909 9288303 ~ 9715061 (-) True G153498
TU207921 lncRNA downstream 134864 9602857 ~ 9603106 (-) True G153481
TU207998 lncRNA downstream 189665 9542118 ~ 9548305 (-) True G153539
TU207976 lncRNA downstream 378120 9359528 ~ 9359850 (-) True G153527
TU207935 lncRNA downstream 400104 9246355 ~ 9337866 (-) False LOC120574352
TU208072 lncRNA upstream 13772 9752259 ~ 9798267 (-) True G153588
TU208076 lncRNA upstream 40802 9779289 ~ 9782563 (-) True G153591
TU208095 lncRNA upstream 55605 9794092 ~ 9842982 (-) True G153597
TU208085 lncRNA upstream 168753 9907240 ~ 10016313 (-) True G153596
TU208092 lncRNA upstream 228095 9966582 ~ 10018859 (-) False G153596
XM_039824655.1 mRNA downstream 331166 9391565 ~ 9406804 (-) True LOC120574368
XM_039824654.1 mRNA downstream 392798 9343701 ~ 9345172 (-) True LOC120574364
XM_039825003.1 mRNA downstream 689847 9043413 ~ 9048123 (-) True cabp5b
XM_039825617.1 mRNA downstream 701142 9020086 ~ 9036828 (-) False sez6l2
XM_039824129.1 mRNA upstream 322799 10061286 ~ 10149481 (-) False cacna1aa
XM_039824126.1 mRNA upstream 322799 10061286 ~ 10149481 (-) False cacna1aa
XM_039824122.1 mRNA upstream 322799 10061286 ~ 10149481 (-) False cacna1aa
XM_039824120.1 mRNA upstream 322799 10061286 ~ 10149481 (-) False cacna1aa
XM_039824125.1 mRNA upstream 322799 10061286 ~ 10149481 (-) False cacna1aa
unassigned_transcript_821 other downstream 1136 9735626 ~ 9736834 (-) True LOC120574583
unassigned_transcript_820 other downstream 4775 9732686 ~ 9733195 (-) True LOC120574609
TU208055 other downstream 6730 9730610 ~ 9731240 (-) True LOC120574633
unassigned_transcript_819 other downstream 6827 9730652 ~ 9731143 (-) False LOC120574633
TU208066 other downstream 15346 9722181 ~ 9722624 (-) True G153584
unassigned_transcript_828 other upstream 83658 9822145 ~ 9822993 (-) True LOC120574648
TU208206 other upstream 622314 10360801 ~ 10390120 (-) False gtpbp1
TU208205 other upstream 622325 10360812 ~ 10390120 (-) False gtpbp1
TU208212 other upstream 622325 10360812 ~ 10390176 (-) False gtpbp1
TU208443 other upstream 1045625 10784112 ~ 10791539 (-) True LOC120574455

Expression Profile