RNA id: XM_039825001.1


Basic Information

Item Value
RNA id XM_039825001.1
length 1546
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC120574579
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9697643 ~ 9739305 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TgcagcagaagaagagaagctCCCATCAGATCACCTTCAATAGCAACCATGTTCTCtgtagctctgctgctgctgctggctgctggatCCTgtgttgatggtcagactctgacagaatctgaaccagcgattaaaagacctggagaatctcacagattgacctgtacagCCTCTGGGTTCAATTTAGGCAGCTATCACATGGCCtggatcagacaggctcctggaaaaggactggagtggattgcCTGGAATAGTAACGGTGGCACAAAAtactactctcagtcagtccaaggccggtttaccatctccagagatgacagcagacagcagctgtatctgcagatgaacagtctgaagactgaagattctgctgtttattattgtgctcgagagccacaGGGTGACTATGCTTTCGACTACTTGGGCCGTGGGACTGTAGTCACAGTAACAGATACTACAACTGCACCGACTCTGTTCCCTTTGGTTCAGTGCAAACCTGGGGCTGCAGATACAATCACTGTTGGCTGTCTTGCTCAAGACTTCTACCCAAAGAGTCTTACTTTACAGTGGACCGATGCCAGTGGGAAAAGCCTTGCTACAGCTGTACAATATCCTCCAGctgagaaaaacaacaaatatacaGGAGTCAGTTTGCTCACTGTATCAAAATCTGAATGGGATTCATGGAGCTCTTTTACTTGTTCTGTGACTCACCCTGGAACGCCCCCCCCCGTGACACTGTTAAAAaAGGCCTCATTGCCTGTCAAAATGGAACTGAACCAACCAAGTCCCAAAGAAATCTTTAGCAACAACCAGGCAAAGTTGAAGTGTATCGTTACTGGACTGGACCAGAATGTTGTAGATCAAATTCAAATCACTTGGAATATCGATGGATCCCCTGTGACCAACAACATCACACCAACACAGTCGGGAGTCAGCACAATGACTCTTACCCGCACTGAGTGGTACAAAGTCAACAACGTGGGCTGTTCTGCCACAAAAGACGATATGACACCAGTTATTCAAGATCTGACTTTCCGCAAAGGAGATGGGAGCGAGCCAAAAGTAACAGTCCACATCCTCCCAGATGAGGACATCATCGATGAGGTCACTCTGGTGTGCCTGGTGTCCAATCCGGTGCAGCAAGATTACTACATCGCCTGGTCAGAACATATTGGAACAAACCCCCCCATCTATACTGATGGCATTAACTTCAGCCAAGTGAAGACCCAACAAGGCTACTCAGTTGCAAGTATTTACACCACCACCAAAGACAAGTGGAACAACTCCACCATGTTCTCCTGCCACGTATGGCCTGGTAGAGGCGAAACGCCTATTAAATCCAGAGATGTGTCTAAGGCCATGAGTAGCCCCATTGAATGTGAGAAATAGTAGATTCAGCTTTAAATGTGGCAGTTTGTGCTAATGTGttgttctgtctctgtgtgtactctCTGCCATGAGAACCTGTCTTTGTGATTGTAAAACGGTCAATTTACTATTGTTTGTCATATTGTGTTTCAATCTGTCTACGTCACATTGTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207921 lncRNA downstream 94537 9602857 ~ 9603106 (-) True G153481
TU207998 lncRNA downstream 149338 9542118 ~ 9548305 (-) True G153539
TU207893 lncRNA downstream 196176 9199658 ~ 9501467 (-) True G153456
TU207976 lncRNA downstream 337793 9359528 ~ 9359850 (-) True G153527
TU207935 lncRNA downstream 359777 9246355 ~ 9337866 (-) False LOC120574352
TU208072 lncRNA upstream 12954 9752259 ~ 9798267 (-) True G153588
TU208076 lncRNA upstream 39984 9779289 ~ 9782563 (-) True G153591
TU208095 lncRNA upstream 54787 9794092 ~ 9842982 (-) True G153597
TU208085 lncRNA upstream 167935 9907240 ~ 10016313 (-) True G153596
TU208092 lncRNA upstream 227277 9966582 ~ 10018859 (-) False G153596
XM_039824655.1 mRNA downstream 290839 9391565 ~ 9406804 (-) True LOC120574368
XM_039824654.1 mRNA downstream 352471 9343701 ~ 9345172 (-) True LOC120574364
XM_039825003.1 mRNA downstream 649520 9043413 ~ 9048123 (-) True cabp5b
XM_039825617.1 mRNA downstream 660815 9020086 ~ 9036828 (-) False sez6l2
XM_039825615.1 mRNA downstream 661058 9020086 ~ 9036585 (-) True sez6l2
XM_039824129.1 mRNA upstream 321981 10061286 ~ 10149481 (-) False cacna1aa
XM_039824126.1 mRNA upstream 321981 10061286 ~ 10149481 (-) False cacna1aa
XM_039824122.1 mRNA upstream 321981 10061286 ~ 10149481 (-) False cacna1aa
XM_039824120.1 mRNA upstream 321981 10061286 ~ 10149481 (-) False cacna1aa
XM_039824125.1 mRNA upstream 321981 10061286 ~ 10149481 (-) False cacna1aa
TU207912 other downstream 8038 9637661 ~ 9689605 (-) True LOC120574389
unassigned_transcript_818 other downstream 11595 9685396 ~ 9686048 (-) True LOC120574592
unassigned_transcript_817 other downstream 15879 9680832 ~ 9681764 (-) True LOC120574395
TU208061 other downstream 15896 9676224 ~ 9681747 (-) False G153579
TU208059 other downstream 15896 9681230 ~ 9681747 (-) True G153579
unassigned_transcript_828 other upstream 82840 9822145 ~ 9822993 (-) True LOC120574648
TU208206 other upstream 621496 10360801 ~ 10390120 (-) False gtpbp1
TU208205 other upstream 621507 10360812 ~ 10390120 (-) False gtpbp1
TU208212 other upstream 621507 10360812 ~ 10390176 (-) False gtpbp1
TU208443 other upstream 1044807 10784112 ~ 10791539 (-) True LOC120574455

Expression Profile