RNA id: TU207939



Basic Information


Item Value
RNA id TU207939
length 378
RNA type TUCP
GC content 0.47
exon number 2
gene id G153499
representative True

Chromosome Information


Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9395424 ~ 9395927 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


agagaacagtggacacacagtttaacatgatggactataggacaggactgctgcttttaactctctgctgggcaggtgttgatggtcagactctgacagaatctgaaccagcgattaaaagacctggagaatcccacagattgacctgtacaacatctggattGTCATTCAGTAGCTACTGGATGGCCtggatcagacaggctcctggaaaaggactggagtggattgctattgatggtggtggtagtAGCAAAtactactctcagtcagtccaaggccggtttaccatctccagagacgacagcagagagcagctgtatctgcagatgaacagtctgaagactgaagattctgctgtttattattgtgctcgacacc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU207976 lncRNA downstream 35574 9359528 ~ 9359850 (-) True G153527
TU207935 lncRNA downstream 57558 9246355 ~ 9337866 (-) False LOC120574352
TU207951 lncRNA downstream 92077 9248397 ~ 9303347 (-) True G153508
TU207940 lncRNA downstream 122310 9249829 ~ 9273114 (-) False LOC120574652
TU207952 lncRNA downstream 130057 9258210 ~ 9265367 (-) True G153509
TU207998 lncRNA upstream 146191 9542118 ~ 9548305 (-) True G153539
TU207921 lncRNA upstream 206930 9602857 ~ 9603106 (-) True G153481
TU208072 lncRNA upstream 356332 9752259 ~ 9798267 (-) True G153588
TU208076 lncRNA upstream 383362 9779289 ~ 9782563 (-) True G153591
TU208095 lncRNA upstream 398165 9794092 ~ 9842982 (-) True G153597
XM_039824654.1 mRNA downstream 50252 9343701 ~ 9345172 (-) True LOC120574364
XM_039825003.1 mRNA downstream 347301 9043413 ~ 9048123 (-) True cabp5b
XM_039825617.1 mRNA downstream 358596 9020086 ~ 9036828 (-) False sez6l2
XM_039825615.1 mRNA downstream 358839 9020086 ~ 9036585 (-) True sez6l2
XM_039825761.1 mRNA downstream 376684 9011223 ~ 9018740 (-) True kctd13
XM_039825001.1 mRNA upstream 301716 9697643 ~ 9739305 (-) True LOC120574579
XM_039824129.1 mRNA upstream 665359 10061286 ~ 10149481 (-) False cacna1aa
XM_039824126.1 mRNA upstream 665359 10061286 ~ 10149481 (-) False cacna1aa
XM_039824122.1 mRNA upstream 665359 10061286 ~ 10149481 (-) False cacna1aa
XM_039824120.1 mRNA upstream 665359 10061286 ~ 10149481 (-) False cacna1aa
unassigned_transcript_762 other downstream 6419 9387327 ~ 9389005 (-) True LOC120574367
unassigned_transcript_761 other downstream 18387 9376433 ~ 9377037 (-) True LOC120574366
unassigned_transcript_760 other downstream 26275 9368657 ~ 9369149 (-) True LOC120574646
unassigned_transcript_759 other downstream 45651 9348069 ~ 9349773 (-) True LOC120574365
TU207965 other downstream 50209 9344716 ~ 9345215 (-) False LOC120574364
unassigned_transcript_763 other upstream 11927 9407854 ~ 9408482 (-) True LOC120574369
unassigned_transcript_764 other upstream 24225 9420152 ~ 9420698 (-) True LOC120574660
unassigned_transcript_765 other upstream 28582 9424509 ~ 9425046 (-) True LOC120574659
TU207913 other upstream 32256 9428183 ~ 9433001 (-) True G153473
unassigned_transcript_766 other upstream 39365 9435292 ~ 9436866 (-) True LOC120574373

Expression Profile