RNA id: TU207952


Basic Information

Item Value
RNA id TU207952
length 432
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G153509
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9258210 ~ 9265367 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caggtgttgatggtcagactctgacagaatctgaaccagcgattaaaagacctggagaatctCACAGATTGACTTGTACAACATCTGGATTCACATTCAGCAGCTACCATAtgaactgggtcagacaggctcctggaaaaggactggagtggatcGCTTTTGTACACACAGGCAGTTCTCATCTCTTTTACTCCCAGTCAGTCCAGGGGAGATTCACCATCTCCAGAGATGACTCCAGCAGTAAACtctatctgcagatgaacagtctgaagaccgAGGACACAGCAGTGTATTACTGTGCACGAGAGACACAGTGAGAGATGATAATAGGAGAGTCATACAAAAACTACTTCCTCTATTTACCATCACCACTGGGATCATATAGTTGACTTAGTATTACTTTTTGTGCCATACTGCTGATAAGTACACAAG

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207900 lncRNA downstream 33890 9217069 ~ 9224320 (-) False LOC120574662
TU207902 lncRNA downstream 38307 9219599 ~ 9219903 (-) True G153462
TU207886 lncRNA downstream 54204 9187250 ~ 9204006 (-) False LOC120574599
TU207892 lncRNA downstream 54351 9196758 ~ 9203859 (-) True G153455
TU207884 lncRNA downstream 64035 9187250 ~ 9194175 (-) False LOC120574599
TU207938 lncRNA upstream 22936 9288303 ~ 9715061 (-) True G153498
TU207976 lncRNA upstream 94161 9359528 ~ 9359850 (-) True G153527
TU207998 lncRNA upstream 276751 9542118 ~ 9548305 (-) True G153539
TU207921 lncRNA upstream 337490 9602857 ~ 9603106 (-) True G153481
TU208072 lncRNA upstream 486892 9752259 ~ 9798267 (-) True G153588
XM_039825003.1 mRNA downstream 210087 9043413 ~ 9048123 (-) True cabp5b
XM_039825617.1 mRNA downstream 221382 9020086 ~ 9036828 (-) False sez6l2
XM_039825615.1 mRNA downstream 221625 9020086 ~ 9036585 (-) True sez6l2
XM_039825761.1 mRNA downstream 239470 9011223 ~ 9018740 (-) True kctd13
XM_039825590.1 mRNA downstream 247279 9003265 ~ 9010931 (-) True hirip3
XM_039824654.1 mRNA upstream 78334 9343701 ~ 9345172 (-) True LOC120574364
XM_039824655.1 mRNA upstream 126198 9391565 ~ 9406804 (-) True LOC120574368
XM_039825001.1 mRNA upstream 432276 9697643 ~ 9739305 (-) True LOC120574579
XM_039824129.1 mRNA upstream 795919 10061286 ~ 10149481 (-) False cacna1aa
XM_039824126.1 mRNA upstream 795919 10061286 ~ 10149481 (-) False cacna1aa
TU207944 other downstream 1342 9256322 ~ 9256868 (-) True LOC120574356
unassigned_transcript_750 other downstream 1428 9256285 ~ 9256782 (-) False LOC120574356
unassigned_transcript_749 other downstream 5437 9252234 ~ 9252773 (-) True LOC120574355
unassigned_transcript_748 other downstream 7941 9249839 ~ 9250269 (-) True LOC120574652
unassigned_transcript_747 other downstream 11514 9244442 ~ 9246696 (-) True LOC120574352
unassigned_transcript_751 other upstream 921 9266288 ~ 9303638 (-) True LOC120574359
TU207955 other upstream 5366 9270733 ~ 9271104 (-) False LOC120574359
unassigned_transcript_752 other upstream 11101 9276468 ~ 9276996 (-) True LOC120574591
TU207957 other upstream 11113 9276480 ~ 9277002 (-) False LOC120574591
TU207926 other upstream 13010 9278377 ~ 9278925 (-) True G153486

Expression Profile