RNA id: TU208206



Basic Information


Item Value
RNA id TU208206
length 662
RNA type TUCP
GC content 0.52
exon number 3
gene id gtpbp1
representative False

Chromosome Information


Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 10352158 ~ 10390176 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TCAGTTGTATTTTTAAATGGATTCAGTGCAAACTGGCAGCATCTGCTTATAAGCCCGTAATTGTAATGTTAGGAAAAGTGAGGTGATACAGTTTGACTAATAACGTATAGGCTATCTAGCGGAGCTGTACGGTAGCGTTTGGAGCTTGCGGCAAGTTACTGTGCTGGCTAGCGTGTTTACCAGCCGACGGGCAGCCGTCATCACAACAATCGGGACAGCTTGACATTTATTAACGTTACTGCAAGGCTGTCATAATAATGGCATCAATAGCAGCGGCGCATGAGCCGGGTATCAGCCCAGGCTCCATACCGCTGGCTGATGCTTTAGTCCCCGCGAGTATATTTGCTCCAGACCGGGGAGGATGCGGGGACGAGGACGAAGACGAGTGTTTTGAGGACGGGGACATGATCAATGGCGAGCCCGAGGGCCGTGGGGTTGACTTCACCAACAAGCTGGCACTTGTTAGCCCAAATGGAGAGCAGTATGACTCGTTACTTCGCCAGCTACGGGACAGGATGGAAGAGGGATGCGGAGAGACCATCTATATGGTTGGAATGGGCTCAGATGGTGGGGACTGGGGCCTGGATGAGAGGGATATGGAGGCCTCAGCAGCCACGGTGCGCTCTATGTGTGAGCAAGTGGATGCTGACCTTATTACGCTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU208203 lncRNA downstream 66635 10286635 ~ 10294166 (-) True G153671
TU208192 lncRNA downstream 191362 10163444 ~ 10169439 (-) True G153663
TU208150 lncRNA downstream 322016 10034440 ~ 10038785 (-) True G153631
TU208147 lncRNA downstream 333102 10025317 ~ 10027699 (-) True G153630
TU208146 lncRNA downstream 335674 10024923 ~ 10025127 (-) True G153629
TU208277 lncRNA upstream 204623 10594743 ~ 10595007 (-) True G153734
TU208577 lncRNA upstream 515235 10905355 ~ 10907608 (-) True G153937
TU208598 lncRNA upstream 560451 10950571 ~ 10959521 (-) True G153950
TU208584 lncRNA upstream 643086 11033206 ~ 11035516 (-) True G153943
TU208656 lncRNA upstream 678923 11069043 ~ 11073776 (-) True G153987
XM_039825976.1 mRNA downstream 184790 10166712 ~ 10176011 (-) False gtf2f1
XM_039825973.1 mRNA downstream 184790 10166712 ~ 10176011 (-) True gtf2f1
XM_039825975.1 mRNA downstream 184844 10166712 ~ 10175957 (-) False gtf2f1
XM_039825974.1 mRNA downstream 184938 10166712 ~ 10175863 (-) False gtf2f1
XM_039824130.1 mRNA downstream 211319 10063992 ~ 10149482 (-) False cacna1aa
XM_039825337.1 mRNA upstream 218878 10608998 ~ 10618057 (-) False luc7l3
XM_039825336.1 mRNA upstream 218878 10608998 ~ 10618056 (-) True luc7l3
XM_039825340.1 mRNA upstream 283222 10673342 ~ 10677290 (-) True LOC120574864
XM_039824400.1 mRNA upstream 348788 10738908 ~ 10772253 (-) False spag9a
XM_039824393.1 mRNA upstream 348788 10738908 ~ 10772253 (-) False spag9a
unassigned_transcript_828 other downstream 537808 9822145 ~ 9822993 (-) True LOC120574648
TU207919 other downstream 622314 9737970 ~ 9738487 (-) False LOC120574579
unassigned_transcript_821 other downstream 623967 9735626 ~ 9736834 (-) True LOC120574583
unassigned_transcript_820 other downstream 627606 9732686 ~ 9733195 (-) True LOC120574609
TU208055 other downstream 629561 9730610 ~ 9731240 (-) True LOC120574633
TU208443 other upstream 393992 10784112 ~ 10791539 (-) True LOC120574455
XR_005642003.1 other upstream 577986 10968106 ~ 10968174 (-) True LOC120575512
XR_005641868.1 other upstream 688467 11078587 ~ 11080606 (-) False LOC120574486
XR_005641867.1 other upstream 688467 11078587 ~ 11080606 (-) False LOC120574486
XR_005641866.1 other upstream 688556 11078676 ~ 11080606 (-) False LOC120574486

Expression Profile