RNA id: TU208443



Basic Information


Item Value
RNA id TU208443
length 793
RNA type TUCP
GC content 0.44
exon number 5
gene id LOC120574455
representative True

Chromosome Information


Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 10784112 ~ 10791565 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ACGAAATACAGGAAATATCTGTCTCCAGTCAAAGCTCTGGTTTTGAAAAGAATCTCTCAGTTTTACTTTCTAATTGCCTCACTCGGTACCAGGCAGCTCCAGGAGAAAGGTTAAGATTTCTGAAGGTGGAAAAAGGATACCCAGCAAAGGATTCGGCTCCACCATACCCTGGGCCAACTATGAACCACGGGGGTGCCGTGGAGCAGCCAGGTGCTCCGCCCCTGGCTGCACCTGTCGCAACAGTGACTCAAACGATAGTAACGCCAGCACTAAATGATGTCCCGGGACAAACTGTGTGTACCCACTGCCAGGAGACGGTCATCACCAAGACAGAGCACAAAGCAGGCCTGATGACCTGGGCCATCTGTGGTGGCCTCACCCTCTTTGGGttttttctttgctgttttATCCCGTTCTGTGTTGATTCCTGCAAAGATGTGGAGCATCGCTGTCCTAACTGCAACAATGTCATCTACATATACAAGCGAATGTGAAAGTGACTGTGAATGAAGGAAAAGACCTCAATGCTTATCTGTAGCCTTAACTTGCTCTACAACatctttggtaacactttacaataaggtacacaaaaaaataggtagttaatgattagtttttgaaagggtagttactgtttttcagaagggtacttaccctttttcagaagggtaacgaatgattagttaccctttttcagaagggtagttactgtttttcagaagggtaacgaatgattagttacccttttttaGAAGGgtacttactgtttttcagaagggtagttacccttttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU208277 lncRNA downstream 189105 10594743 ~ 10595007 (-) True G153734
TU208203 lncRNA downstream 489946 10286635 ~ 10294166 (-) True G153671
TU208192 lncRNA downstream 614673 10163444 ~ 10169439 (-) True G153663
TU208150 lncRNA downstream 745327 10034440 ~ 10038785 (-) True G153631
TU208147 lncRNA downstream 756413 10025317 ~ 10027699 (-) True G153630
TU208577 lncRNA upstream 113816 10905355 ~ 10907608 (-) True G153937
TU208598 lncRNA upstream 159032 10950571 ~ 10959521 (-) True G153950
TU208584 lncRNA upstream 241667 11033206 ~ 11035516 (-) True G153943
TU208656 lncRNA upstream 277504 11069043 ~ 11073776 (-) True G153987
TU208730 lncRNA upstream 480280 11271819 ~ 11272848 (-) True G154036
XM_039824400.1 mRNA downstream 11859 10738908 ~ 10772253 (-) False spag9a
XM_039824393.1 mRNA downstream 11859 10738908 ~ 10772253 (-) False spag9a
XM_039824401.1 mRNA downstream 11859 10738908 ~ 10772253 (-) False spag9a
XM_039824399.1 mRNA downstream 11859 10738908 ~ 10772253 (-) False spag9a
XM_039824398.1 mRNA downstream 11859 10738908 ~ 10772253 (-) False spag9a
XM_039824726.1 mRNA upstream 16768 10808307 ~ 10811425 (-) True LOC120574453
XM_039824727.1 mRNA upstream 16768 10808307 ~ 10811405 (-) False LOC120574453
XM_039824728.1 mRNA upstream 21314 10812853 ~ 10820285 (-) True LOC120574454
XM_039824607.1 mRNA upstream 140259 10931798 ~ 10941167 (-) True dhps
XM_039825783.1 mRNA upstream 151273 10942812 ~ 10947670 (-) True fbxw9
TU208212 other downstream 393936 10360812 ~ 10390176 (-) False gtpbp1
TU208206 other downstream 393992 10360801 ~ 10390120 (-) False gtpbp1
TU208205 other downstream 393992 10360812 ~ 10390120 (-) False gtpbp1
unassigned_transcript_828 other downstream 961119 9822145 ~ 9822993 (-) True LOC120574648
TU207919 other downstream 1045625 9737970 ~ 9738487 (-) False LOC120574579
XR_005642003.1 other upstream 176567 10968106 ~ 10968174 (-) True LOC120575512
XR_005641868.1 other upstream 287048 11078587 ~ 11080606 (-) False LOC120574486
XR_005641867.1 other upstream 287048 11078587 ~ 11080606 (-) False LOC120574486
XR_005641866.1 other upstream 287137 11078676 ~ 11080606 (-) False LOC120574486
TU208632 other upstream 319429 11110968 ~ 11137482 (-) False tnrc6c1

Expression Profile