RNA id: TU208584


Basic Information

Item Value
RNA id TU208584
length 1977
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G153943
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 11033206 ~ 11035516 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAAAAATGCATGTTTCACATGACAGGAATGACTAATTTGTGCTAGCGTGTGTGTATATCAGAAAGCATATCTGTGCACTGTACATTGTTGACACATTGGCAGAATTTTCAAGCCTTGCTTACTGGTATAATCCTGCGGTGACATGGGCCTGGACAGGACTTGTCTGAGGGCGTCCAGCCACTCTCTCTGCTCCCTCTCCTGCTCGCACATGAAGACAAATTGTCGCTCGGGCGTCCCCACCATAACACCACACTTCCACCTGTTTCCCCGAGAATGCTTTGGGACACACTCCTTCACAGAGTAACCTTTGTTTGTGGGGCCGATGAAAATGACCCCTAACTCCTCTGCATCCTACTTTGACAATAATGACACACATTCAAACAGAATGGTGGGTAAAGTTCTTGACAAACATCCTCACAGCAATGCAAAGCATGAAAAGTCCATACCAGCTGGCCTTTGAAGTAGAACAACTTCCTGTTTTGAGAGTCCAAAATAAACCACCTCTTTTTGAATGGCTCCTTTTCGATGGCCCTGTCTTTTCCATGTATCCCTCTTTGATGTAGTTTCTTGTTATCTTTGGTATTAGCTGACAAAGAGGCGTAAAGGAACACGTTTAAAACATAAAAGCGAAAAGAGGCAAGTTTCTATTATTATTGCGTTTGACTGCTGAAAGTTAAAGTTCACTACATTAACTGGGAATAAACTGAAATATGTCTTTAAGTATTTAGAGTGCATTTCAAATTCATCAACATCTAGGAGACATTTTGTCAGTTTATTCGGTTTTGAGAAGGTTTGATGCCTACTTCTTCATCGCTTCCAGTTGGGTACGCTGTCTTCAAGTACGCATAGCGAGCAGCACGAATGGCATTGTACCATGTCACTATTTCCTAGAGTAGAAGAAGAGACTTTGAGCTTCATGACAatcaatatatgtatatgtatatatatatatatatatatatatatatatatatatatatatatatatcatctaAAGTATAAATAACAGTAAccagcaaatatatatataaaactttaGATTTAGACCTGCAGGGGCTGAAACTACAACCGATCAATGCTCCGGTCAGTTTTGTAATAGTATGACTTAGTCGCAGCTAGTACAATACAAAGAAATGTTTGCTGTAACACATAAAGGTGaaaaagagatattttgcttACATTTTTTTGACGAGTTAGATATGAAGATCAGTACTACTCTCATGTCTCTGCATTGAAGCCAGGAAGCAATGAGCTTAGTTTAGTTAACGAATGGAAGCAGGGGGAATCAGCAGGCCTTCTGTCCAGAGTTTAAAAATGTGCCTactagcacctctaaagctccgAAATAGTTAAAGCACGTAACTATACCGACATAGCAATTAATGCTGGTTACTGTTATTTATACTTTAGATGATCATGCGCTCCCACCTCCGGACTCTCGTGATAAACATAGAGGTTCCTGGTGTGATCGTCTGCTTGGTAACTGATCTGCAGCCCATGAGGATGACCAATCTTCTCTGGTTGAAAGGTGGCGTTTAGGTCTTTGACGGAGATTACAGCTTTAGGGCCTTTGGACTCCTGGATCACACATTTATAAATGTGCACATTAGAGTTTTTAGAAATTTCACAACAACTGGATTAAATTAGCACGGGGCTGTTTGTACACTAATGTTTAGCTCCAATGGCTCAAGTGATGGCAGTGTCGGTCAGCCAGTCCACCACTCTGGTCTGGACTGAAATAACTCAAAAACgtctggatggattgccataaaATTGGGTGCAGACATTCAATGCCCCAAatgatgaattgtaataactttgatcccctgacctttcctctagcaccatcatcaggtcaaaattgtaGGTTGTCcagtactttggtttatgaccaaatacttgcaaaactaatgacactCCTATCAACTGTTcttgtttagtgctaattagcaaatatcAGTTTGCTAACACTGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208598 lncRNA downstream 73685 10950571 ~ 10959521 (-) True G153950
TU208577 lncRNA downstream 125598 10905355 ~ 10907608 (-) True G153937
TU208277 lncRNA downstream 438199 10594743 ~ 10595007 (-) True G153734
TU208203 lncRNA downstream 739040 10286635 ~ 10294166 (-) True G153671
TU208192 lncRNA downstream 863767 10163444 ~ 10169439 (-) True G153663
TU208656 lncRNA upstream 33527 11069043 ~ 11073776 (-) True G153987
TU208730 lncRNA upstream 236303 11271819 ~ 11272848 (-) True G154036
TU208792 lncRNA upstream 316687 11352203 ~ 11352565 (-) True G154088
TU208823 lncRNA upstream 431392 11466908 ~ 11467112 (-) True G154115
TU208886 lncRNA upstream 494180 11529696 ~ 11557733 (-) True G154163
XM_039824073.1 mRNA downstream 16615 11008642 ~ 11016591 (-) True LOC120574053
XM_039824076.1 mRNA downstream 16615 11010199 ~ 11016591 (-) False LOC120574053
XM_039824075.1 mRNA downstream 16615 11010199 ~ 11016591 (-) False LOC120574053
XM_039824074.1 mRNA downstream 17512 11008642 ~ 11015694 (-) False LOC120574053
XM_039824071.1 mRNA downstream 39176 10988167 ~ 10994030 (-) False rln3a
XM_039824812.1 mRNA upstream 22376 11057892 ~ 11063850 (-) False c15h17orf75
XM_039824811.1 mRNA upstream 22376 11057892 ~ 11063850 (-) True c15h17orf75
XM_039824820.1 mRNA upstream 43029 11078545 ~ 11080607 (-) False LOC120574486
XM_039824819.1 mRNA upstream 43029 11078545 ~ 11080606 (-) False LOC120574486
XM_039824818.1 mRNA upstream 43029 11078545 ~ 11080605 (-) True LOC120574486
XR_005642003.1 other downstream 65032 10968106 ~ 10968174 (-) True LOC120575512
TU208443 other downstream 241667 10784112 ~ 10791539 (-) True LOC120574455
TU208212 other downstream 643030 10360812 ~ 10390176 (-) False gtpbp1
TU208206 other downstream 643086 10360801 ~ 10390120 (-) False gtpbp1
TU208205 other downstream 643086 10360812 ~ 10390120 (-) False gtpbp1
XR_005641868.1 other upstream 43071 11078587 ~ 11080606 (-) False LOC120574486
XR_005641867.1 other upstream 43071 11078587 ~ 11080606 (-) False LOC120574486
XR_005641866.1 other upstream 43160 11078676 ~ 11080606 (-) False LOC120574486
TU208632 other upstream 75452 11110968 ~ 11137482 (-) False tnrc6c1
TU208722 other upstream 167934 11203450 ~ 11225546 (-) True G154033

Expression Profile