RNA id: XM_039824824.1


Basic Information

Item Value
RNA id XM_039824824.1
length 6037
RNA type mRNA
GC content 0.56
exon number 17
gene id tnrc6c1
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 11098316 ~ 11137528 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttttaaaatgtcaaatgaaAAAATACAACCACTTACGTTTTTGTTATCGGTCAATAATTGCTTTGGTGCTAGTGCGCTCAACAActgctcctcctcatccctGCATTTCTGCTTTGTTGTTACCTGTCCCCCACCACCCTCCCATCTTCACAGTGCCAGAATCTGCCAAGCTCGACCCCACCCCTCTTCCCCCCGTCAACCCCAGTGCCGTCCCATCTGTACCCCCTAGCAGTGGCAATGGCAAGCGCGCCCCCTCTGGATGTCAGCCACAGACAGCACAGCAGCCCCAGACTCTGCTCCAGCAGCGCTACCCGCCAAGAGAGGTGCCCCCACGCTTCCGCCAGCAGGAGCACAAACAGCTGTTGAAGAGGGGCCAGCCTTTGCCCTCCGGGACTCTGCCTCTCACCACAACGGGACGTCCGGCCACTACTGAacctgcagcagcagtagccatacactcctctccctcctgctcctcttcctccacagccAGCCTGCCTACAGAACTGCCTCCACAGAGTGGCCAGGGAGCCCAGTATGATAATCCCCTCTGGGGACACCTGCCAGCCAACAGGAGTGCCACAAGATCTTCAACCAGTCTCAGTGGCTGGGATCAACTGATCATTGACCAGAAGAACACAGAGGCTTGGCCTTCGATTACCCTCAGCCAGAGCCAAGCCCATCCAGGAGGATGCCCTTTGGACACTGACCCTGGTCACctgaccagcagcagcagtagtactagtagtagttgtagtacAGTGAGTATGGCCACGGGGGCCAATAGCCAGACAGGCCATTTTCCTACCAACCACCTTAGCAGCAAGGCCAACAGTGGGCCCAGCCCTGCCAATCATACTGGAACCAGCATGCTCAATAGCCAGGCCAATCGCAACTGGGGCTCTGGGCCTGGCCCCTCCCATTGCCCCCCTCAGTCCTCAGTGGGGAGTGAAGGGAAGAATGACGGCCCAGTGGGGGGAGGAGGCAGCAGGGGCTGGGGGGCTTCAGCATCCTCCACTACCAACTTTAACTTGAACCTAAACCCTAATGCCAACCCTTCTGCCTGGCCCATGTTGGGGCATGATGGTAGTGGCACAGGGGGAGGTAGCTCAGGGGGAGCCAACGCCATTTCACCTCCTCAACCTACATCCAACCTCTGTAATCCGCCTGGCCCCCCACCAGCCCAGACCAGCACATGTACCGGAGCCAACACTAACAGCAACTCCTCTGGGATTGGCACCGCCTGGGGTAACATAATGGCCTCTGACACATCAGAGCCACACCGCTCCCCAGCCATGAATGTGTCTTTCAGTTCAGAACCTCAGAACCTTAAAACTGATGGACCAAATCACACTAATAAGCAGGAACCCCCCAGCCCCATCCGCAACTTGTCTGGCTGGGGTAGTTCACCTGTAGGCTTGGGTTCCATGGGCCAGACCCCTCCAGGGGGCCCGCAGGTCAATGGAGAAGATGGTAGCTCAGTATGGGGTAACAGTGGCGACTCAAAGGCATCTTCATCTGAGGAGGCCCCGGGTTGGGACTCTGGCTGGGGCCTTGGAGGAGGTGGAGCAGGAAACTCTGGAGGCTGGGGTGACCAGTCTGGTGGAAACTGGGGTAAGCAGCGCACTGAGGAGGCCCAAGGAGGCTGGGATGCCCCCACCTCTCCTCCCCAGGAAACACAGGCTAGTCCTTGGAGCAAAACTGTGAACAAAGCTGGTGCAAGTGAAGGGAGCAGTGACAGCACGGAAGGACATCCCAAGCAAAGAGACCCCTCATCCAGAGATaatccagctcctctgctgCCTGCCCAGGATCTGGACCCCAGGGTGTTGTGTAACACTGGCTGGGGACAGACCCCTGTTCGCCAGCACACCTCCTGGGACATGGACAGTACTAAACACAAGAATGATGCAGCCGCTGAATCATGGGGCTCTGGCCCAACCACTCCAAGCGATGCCCAAGGACCCTCCAACAGTAACATGGTCCCCTCTCAGAGGACTGACCCTGGGAGAAAAAATGATGTGCCTGGTTCTCAGGGATCTTCAGGTTGGGGTGGAAGCATAGCTTCCAACAATCAGCCTAGCTCTGGTTGGGGAGAACCACCCAACAACATTAAGCCCCCAGGTGGCCCTGGTGGCTGGGGGAATCCTCCAACAGGAGGATCCACCACCAGTATACCCAAGAATGGGGGTCAATCCTGGGGAGAAGAGAAGTCAACTGGGTGGGATGATTCTCGCAACAAGGCAACATCCCAGAGCTGGGGAGAGCAACCCAAGGCATCCCGAAGCTGGGGCAATAGTGGAGGGAGCAGTAATGCAGCGGACTGGAGAGAACCAGAAGAGAGCAAAAAGAGTCCCACCAACCCAGGGTGGGAGGGAGAAGCAGGAGGCTGGAAGGAAAACCCACGAGGCTGGGGAATGTCTTCTTCAGGACCTGGGATACCAGCAGCTGGAGGAAATGGGGGCTGGGGAGAGCCAGTGAGTCAACGTCCCAGTGGCCCTCCCCAAAGTTGGGGGGGCAAGCCTCAGGATGGACCCAGTGGTAGTAGTGGGGGAGGGAGCATAGGCTCTTGGATTGGATCAGGCTCAGTGAAGCAGGGTGGAAGCTGGAGTGGCAGTAAGAAGGAGTCCTCAGCTGAGCCTACAGGCTGGGAAGAGCCCTCCCCACCTTCAATCCGACGTAAAATGGAGATAGATGATGGGACCTCAGCTTGGGGTGACCCTGTTACCTATAGCAAGTCAGTCAACCTGTGGGACAGGAACAATCCAGGAATGTCCCAGGCTAAAGTTACCACTGGAGGCAATAACCCCCCAGGCcccaacaccaacaacaacaaccatccCCACTCTCACAATCACCCCTATCACGGGCCGTCTGCACCTTTACAGAACCACACCCAAAACTCCCAAAACCCAGGGCCCACCAGTGGGCCCATGGATCCTGTTGTCCAACACCAGTCTGGGCCATCTCACAACAGGGCCCCCCTGATAGCTCAAGgtTGGGGAGAGATACCGAGCACCCACACAAAATCGGAGAGCTCTTGGGGGGAAGCTGCACCCGCTCCGGTCAGCGTTGACAATGGGACGTCTGCCTGGAGCAAATCTACCGGGAGCTGGGGAGACCCCGACAGCTATGGCAGAGGCAACCCTACAGTGACGTCTGCATCTTGCAAACCTGCCCCCAAACCTATGCAAGACGGATGGGGAGGTGGAGGTGAAGAGCTGAACTTGTCGGGGGGTCAGTGGGATGCTGAGGAGGGAGACATGTGGAACAATGCTGCCTCCCAGGAGAGCAACTCCTCCTGTAACTCTTGGGGCAATGCATCTAAAAAGGGCCCACAGAAGCTCTCCCAGGGAAAGATCCCTGGAAAGCAAGAAGATGCCTGGATCATGAATCGTCTCATCAAACAGCTGACAGACATGGGCTTCCCTAGGGATCCAGCAGAGGAGGCTTTGAAGAGCAACAACATGAGCCTAGACCAGGCCATGAGTGCCCTGCTCGAGAAGAAGACAGAGATGGACAAACGGGGGATGGGGATTGCCGGCCACGACTACAACAACGGGCTCATCAACAAGCCCATGAGCTGCCCTCGGCCTCCGCTTCTTTCCAAAGACCCCTCGTCAGATCCCCGCTTGCCCTTCATGGATAAGCAGATGCAGAGTGGAATGTTTGGCAGTGGTGGAGCAGTACAAGCCCGGGCCATGCAGCATCCGCAGCCGCCTCCTCACCCGTCAGTGCCGCCTCTCAGTTCCTCTCAGCCTAGTCTACGGGCTCAAGTGCCTCAGTTTCTCTCCCCTCagGTTCAAGCACAGCTCTTACAGTTTGCAGCAAAAAACATTGGTCTGAATCCTGCACTTTTAACCTCACCAATAAACCCTCAACATATGACCCTTCTGAATCaactttaccagctgcaactgGCATACCAGCGTTTACAAATTCAGCAGCAGATGTTGCAGGCGCAGCGCAACGTTTCTGGCCCCATTCGACAACAAGAGCAGCAAGTTGCACGTACAATCAATAACATGCAGCAGCAGATCCAACAGCACCAGCGTCAGCTGGCCCAGGCCCTGCTgatgaaacagcagcaacagcagccgCCCCCCTCCCACTCGGGCCTGCATCATGGAGGGTCCAAATCCACCCTGGATTCATTTCCAGGTCACCCCCAGGCTCCAGGCCTCCCTGACCTGCAGACCAAAGAGCCGCAGCCATCTCCCAACACTTACAGTCCCTACTCTCTCTCTGGACTGAATCCAAACATGAATGTAAACTGCATGGAGGTGGGAAGTCTGTCTATGAAGGAACCCCCCCAGCCTCAATCACGCCTGTCGCAGTGGACGCATCCCAACTCCATGGAAAGCCTCTCTGGAAGCTCCTCTCCTCTAGAGCCCAACCTGGGCAAGCATGGTGCCAACCTGGGCCTCCCTGGTAAGCCCCCTCAGCTGGAGGACTCTTACAGCCCCTACAACATGATGTCCAGCTCAGAGTCTCCTACCAGCCCCCTTGTCACCCAAGACAGCTGGGGACAGGGCAAGAGCAGCAATGAAAAGATGGCCAATGGGACCAATATCAACTGGCCACCAGagTTCTGCCCCGGTGTGCCCTGGAAGGGTCTTCAGAATATTGACCCTGAGACCGACCCTAATGTGACCCCAGGCAGTGTCCCCAGCGGGCCCACTATCAACACCAATATCCAAGATGTCAACCGCTACCTGCTAAGGGACAGGAGTGGAGGTAAACTGTCAGAGATGAAATCTACTTGGTCTCCAGGCCCCATTTCTCACAACCAGGGCTCTCTGTCCCATGAGCTGTGGAAGGTCCCCCAGGGCCCCCGGAGCAGCAACACAGCCCCTTCCCGACCCCCACCTGGCCTCACCAACACCAAGCCTTCAACCTGGGGGGGCAACTCCCTGGGTCTGGCCCAAGGCTGGAGCAGCTCTTACACCTCAGCAGGAACCACATGGAGTACAGACAGCTCCACCAGGACCAGTAGCTGGCTGGTTCTGAGGAACCTCACTCCACAGATTGACGGTTCAACTCTGCGTACACTGTGCATGCAACATGGCCCCCTCATCACATTCCACCTCAACCTGACACAGGGCAACGCTGTGGTGCGCTACAGCTCCAAGGATGAAGCTGCCAAGGCTCAGAAGTCCCTGCACATGTGCGTTCTTGGGAACACCACCATCCTAGCAGAGTTTGCTGGGGAAGAGGAAGTGAACCGCTTCTTTGCACAGGGCCAGTCACTTGGCGGAACAACCAGCTGGCAGGCCACTCCAGGCACCAATCCGACAAGGCTGGGTGGGTCGGGGTCCGGAGCCTCCCATCCCATCGGTCACTCACCCCACTGGAACAacaacaacggcagcagcagcagtagcggTGGCCTGGGAACAGGTGGAGCAAAGACAGGCGGAGAGTTGCTGTGGGGTGGTGTGCAGCAGTATTCCAGCCTGTGGGGACCCCCAAGTGGAGAGGAGGGACGGGTCATGGGAAGTCCCACCCAAATCAATACGCTGCTGCCTGGGGACCTATTGAGTGGGGAGTCCATGTAGGACGGAAGAGCCCAGGCTTAACAAACACCAGTAGGAGCAAAATCTTGCAAATCATTGTGGAGATAATCAGTGTGGCTGTAACGGTGACAAGGAGAGACGAGAGGCGGGCGAGGCTACATCCTCGCTGCTCACCCTCGCCAACCTCCTCTActcctttttagttttttaatgacatttcagTTGCAGTTCTTTTGTGAATCTCAGTGAGAGATTTTGGTCACAGTGTtcaacttttactttactttacagaAAGAAGTCTTTcattcaagaaaaaaaagagaccttTTTACAGAAATAAACTTTTGGGAACTCGCCGTGTGAAACATGTAGTTTAGTTCAAACTGACACGATGAGCTGCCATCTTAAAACTTGCTTAATCCCTCTCTGCCTTTTCAGGCAATCATACTGCACCTCAGAGATCCATGAAAAGGCATCATTCCCAAAGTAAAACAATTCAATCAGAGTGGTTGTCAAACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208656 lncRNA downstream 24540 11069043 ~ 11073776 (-) True G153987
TU208584 lncRNA downstream 62800 11033206 ~ 11035516 (-) True G153943
TU208598 lncRNA downstream 138795 10950571 ~ 10959521 (-) True G153950
TU208577 lncRNA downstream 190708 10905355 ~ 10907608 (-) True G153937
TU208277 lncRNA downstream 503309 10594743 ~ 10595007 (-) True G153734
TU208730 lncRNA upstream 151963 11271819 ~ 11272848 (-) True G154036
TU208792 lncRNA upstream 232347 11352203 ~ 11352565 (-) True G154088
TU208823 lncRNA upstream 347052 11466908 ~ 11467112 (-) True G154115
TU208886 lncRNA upstream 409840 11529696 ~ 11557733 (-) True G154163
TU208885 lncRNA upstream 433639 11553495 ~ 11557733 (-) False G154163
XM_039824816.1 mRNA downstream 13743 11081719 ~ 11084573 (-) True LOC120574485
XM_039824820.1 mRNA downstream 17709 11078545 ~ 11080607 (-) False LOC120574486
XM_039824819.1 mRNA downstream 17710 11078545 ~ 11080606 (-) False LOC120574486
XM_039824818.1 mRNA downstream 17711 11078545 ~ 11080605 (-) True LOC120574486
XM_039824811.1 mRNA downstream 34466 11057892 ~ 11063850 (-) True c15h17orf75
XM_039824102.1 mRNA upstream 52665 11172521 ~ 11263721 (-) True LOC120574065
XM_039824105.1 mRNA upstream 52665 11172521 ~ 11248970 (-) False LOC120574065
XM_039824103.1 mRNA upstream 52665 11172521 ~ 11241443 (-) False LOC120574065
XM_039824106.1 mRNA upstream 52665 11172521 ~ 11233597 (-) False LOC120574065
XM_039824104.1 mRNA upstream 52665 11172521 ~ 11233505 (-) False LOC120574065
XR_005641868.1 other downstream 17710 11078587 ~ 11080606 (-) False LOC120574486
XR_005641867.1 other downstream 17710 11078587 ~ 11080606 (-) False LOC120574486
XR_005641866.1 other downstream 17710 11078676 ~ 11080606 (-) False LOC120574486
XR_005642003.1 other downstream 130142 10968106 ~ 10968174 (-) True LOC120575512
TU208443 other downstream 306777 10784112 ~ 10791539 (-) True LOC120574455
TU208722 other upstream 83594 11203450 ~ 11225546 (-) True G154033
unassigned_transcript_847 other upstream 366998 11486854 ~ 11486925 (-) True trnaq-cug_14
XR_005641884.1 other upstream 1307648 12427504 ~ 12565471 (-) False cep112
unassigned_transcript_848 other upstream 1723037 12842893 ~ 12842974 (-) True trnal-uag_2
XR_005641885.1 other upstream 1836666 12956522 ~ 12972810 (-) False iqck

Expression Profile