RNA id: TU208730


Basic Information

Item Value
RNA id TU208730
length 263
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G154036
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 11271819 ~ 11272848 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCATCATTGTGTGCTTCCTCATATGGATCATCCTTAAGACCAAAACTACCAAAAGGCGCACCAAAATGAAACCGAGGAACGTCACCAACAATGATGTTTATGAGGACATGCGTGGAACAATCAGACGCTAAAGATGTCAGCCTGCACGCAAGCAACCTGAAACTCCACCATCTCTCTGCACCACTAAGATGCAAGTTATGCATGAGGAGCAATGTTGCAACTCAGCATATTCTCTGTAATCTATTCTGGCCCTCTGTGTGTC

Function

GO: NA

KEGG:

id description
ko04640 Hematopoietic cell lineage
ko04612 Antigen processing and presentation
ko04672 Intestinal immune network for IgA production
ko05150 Staphylococcus aureus infection
ko05310 Asthma
ko05320 Autoimmune thyroid disease
ko05321 Inflammatory bowel disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208656 lncRNA downstream 198043 11069043 ~ 11073776 (-) True G153987
TU208584 lncRNA downstream 236303 11033206 ~ 11035516 (-) True G153943
TU208598 lncRNA downstream 312298 10950571 ~ 10959521 (-) True G153950
TU208577 lncRNA downstream 364211 10905355 ~ 10907608 (-) True G153937
TU208277 lncRNA downstream 676812 10594743 ~ 10595007 (-) True G153734
TU208792 lncRNA upstream 79355 11352203 ~ 11352565 (-) True G154088
TU208823 lncRNA upstream 194060 11466908 ~ 11467112 (-) True G154115
TU208886 lncRNA upstream 256848 11529696 ~ 11557733 (-) True G154163
TU208885 lncRNA upstream 280647 11553495 ~ 11557733 (-) False G154163
TU208897 lncRNA upstream 367180 11640028 ~ 11641512 (-) True G154173
XM_039824102.1 mRNA downstream 8098 11172521 ~ 11263721 (-) True LOC120574065
XM_039824105.1 mRNA downstream 22849 11172521 ~ 11248970 (-) False LOC120574065
XM_039824103.1 mRNA downstream 30376 11172521 ~ 11241443 (-) False LOC120574065
XM_039824106.1 mRNA downstream 38222 11172521 ~ 11233597 (-) False LOC120574065
XM_039824104.1 mRNA downstream 38314 11172521 ~ 11233505 (-) False LOC120574065
XM_039823869.1 mRNA upstream 17018 11289866 ~ 11293711 (-) False LOC120573949
XM_039823867.1 mRNA upstream 17018 11289866 ~ 11292294 (-) True LOC120573949
XM_039823761.1 mRNA upstream 26359 11299207 ~ 11309655 (-) True LOC120573873
XM_039823762.1 mRNA upstream 37830 11310678 ~ 11318550 (-) True LOC120573874
XM_039823755.1 mRNA upstream 55421 11328269 ~ 11338111 (-) True gga3b
TU208722 other downstream 46273 11203450 ~ 11225546 (-) True G154033
TU208632 other downstream 134337 11110968 ~ 11137482 (-) False tnrc6c1
XR_005641868.1 other downstream 191213 11078587 ~ 11080606 (-) False LOC120574486
XR_005641867.1 other downstream 191213 11078587 ~ 11080606 (-) False LOC120574486
XR_005641866.1 other downstream 191213 11078676 ~ 11080606 (-) False LOC120574486
unassigned_transcript_847 other upstream 214006 11486854 ~ 11486925 (-) True trnaq-cug_14
XR_005641884.1 other upstream 1154656 12427504 ~ 12565471 (-) False cep112
unassigned_transcript_848 other upstream 1570045 12842893 ~ 12842974 (-) True trnal-uag_2
XR_005641885.1 other upstream 1683674 12956522 ~ 12972810 (-) False iqck
TU209391 other upstream 1700484 12973332 ~ 12979685 (-) False sun1

Expression Profile