RNA id: XR_005641892.1


Basic Information

Item Value
RNA id XR_005641892.1
length 453
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id LOC120574720
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 12677493 ~ 12679110 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAATCTCTCTGTTTGCCAGGCGATCCCAGTCGATGCGTCGGAAGAAGGCCTGCTCCCTGATGTCCCTCTCGCCCTCTAAGCCACAGCCGAGACGCTTTGACGGGTGCTTGGTCATCAGCTGGTATTAAACAGAAGAGGAGGCATTAGAAGATGGACACAGCTTCTTTAGACATGGACTTGGGGTAGGACACATTGTGTTCCATGATGGACTGGAAGAGCTCGTCTTCATCCTCGCCATCAAATGGAGGCTGAGAAGAAAGACAAACACAGTGTCACAGCTTGAGGGTTATTCTTTGAAACCTGACAAGATACTGAAGTGACAAGAGCAGCATGTTAAGccccccctcccgaaaaatgtctgctctgattggtcagcttttCAGGGTCATTTTCATATGCGCTCTGCAAGTCTCTGcacgtcattgcagccggggaattcaattcaattcagt

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641890.1 lncRNA downstream 108859 12568219 ~ 12568696 (-) True LOC120574718
XR_005641891.1 lncRNA downstream 109745 12567178 ~ 12567810 (-) True LOC120574719
TU209168 lncRNA downstream 276080 12400252 ~ 12401475 (-) True G154368
TU209165 lncRNA downstream 276124 12400252 ~ 12401431 (-) False G154368
XR_005641900.1 lncRNA downstream 303561 12361239 ~ 12373994 (-) True LOC120574757
TU209226 lncRNA upstream 56413 12735503 ~ 12737463 (-) False LOC120575506
TU209256 lncRNA upstream 87608 12766698 ~ 12768603 (-) True G154437
TU209257 lncRNA upstream 90319 12769409 ~ 12770122 (-) True G154438
TU209269 lncRNA upstream 99925 12779015 ~ 12781445 (-) True G154446
TU209357 lncRNA upstream 192468 12871558 ~ 12953388 (-) False G154515
XM_039825065.1 mRNA downstream 112084 12437544 ~ 12565471 (-) False cep112
XM_039825063.1 mRNA downstream 112084 12437544 ~ 12565471 (-) True cep112
XM_039825064.1 mRNA downstream 112226 12437544 ~ 12565329 (-) False cep112
XM_039825066.1 mRNA downstream 134742 12437545 ~ 12542813 (-) False cep112
XM_039825067.1 mRNA downstream 250049 12413431 ~ 12427506 (-) True axin2
XM_039825577.1 mRNA upstream 15795 12694885 ~ 12727024 (-) True LOC120575015
XM_039825576.1 mRNA upstream 15795 12694885 ~ 12714698 (-) False LOC120575015
XM_039826336.1 mRNA upstream 56354 12735444 ~ 12737483 (-) True LOC120575506
XM_039823969.1 mRNA upstream 67727 12746817 ~ 12749160 (-) True LOC120574004
XM_039823970.1 mRNA upstream 67727 12746817 ~ 12749150 (-) False LOC120574004
XR_005641884.1 other downstream 112084 12427504 ~ 12565471 (-) False cep112
unassigned_transcript_847 other downstream 1190630 11486854 ~ 11486925 (-) True trnaq-cug_14
TU208722 other downstream 1452009 11203450 ~ 11225546 (-) True G154033
TU208632 other downstream 1540073 11110968 ~ 11137482 (-) False tnrc6c1
XR_005641866.1 other downstream 1596949 11078676 ~ 11080606 (-) False LOC120574486
unassigned_transcript_848 other upstream 163803 12842893 ~ 12842974 (-) True trnal-uag_2
XR_005641885.1 other upstream 277432 12956522 ~ 12972810 (-) False iqck
TU209391 other upstream 294242 12973332 ~ 12979685 (-) False sun1
XR_005641817.1 other upstream 656359 13335449 ~ 13421951 (-) False prkar1b
TU209766 other upstream 1371648 14050738 ~ 14057312 (-) False med9

Expression Profile