RNA id: TU209256


Basic Information

Item Value
RNA id TU209256
length 1821
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G154437
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 12766698 ~ 12768603 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACAAGTAGGCGCAGTCTGCAATTTTGACTAAAGCCCCAAATGCCAACACAACATACAAATCCCCTTTGTCACAAAAGGTACCAAAATGGTAAATTTGATCCTGGACGAGCCTCCAATTTGtcacaactaaaaaaaaaacaaggctcGACAAAGGAGGGGAGACCACACGTGAGTTGCAACTATCAAGACGTTTATTTTACATAACTAAACAGGGAAACCAGTGTAATGACAAAGTGAACGTATCTGGTTGACTGCCACCAGCTTATAGATTGCCTTGCAACCAGACCAGGTGAGCCGTGTGTCCCCATCAGCCTCTCACCTGCTGAGAAACACTGCTGAAGTTCTCGTGAATGTAGTCCATGCTGCGTTTCTCCAGCACCTTACAAGAATGGGCCTCAGCAAAGCAGTGAATCCCCACACAGTTCATCTCATCCATCTGATGCTCCATGAAACGACAACAGGCCTCTCGAACAGCCATCACATCCAGCAGATTGGCAGCTGCCAGCAGGGCCTGGACCAAATGTTATTAGTTTTCAGCACAAATGCTCTTTAGGAAGGGTGGCAGtggggaaggaaaaaaaaaataagagctGATAATTTACCTGCACATTTGCTTTAGAAATGTAGACCTCTGAGGTGTAAGCGTAGCTCACCAACATGCCAATCATCTGAGGCTCAACTCCATTGATGGCAACACGCTCCTGTTTGGACTCTATCAGGTCAGTGGAAAACATTGCCTtatttgatagctcctcgatcctcggctgaaccggaaaGCTGTCCCTCCTTtatgaaggccgtctcaaagctcttatttctgccccgaggagcaaggagcgagcatcgaggagggatcacaaAGAAGCCatgagcgaggatacacgagagcagccttcccggaagccgtgcagctgaaaagGCTGCCAACTTCACccatacagctgacaaattGACAGGACGCTTTAGAGGAAAGGACATCTCATctctctaaaaacacatttcctcctCGCATCTCTCCTGTGCTTCTTCGGTGGGacggactaagacgcgaggaagggagccaagtggaggagtcgaggATGCAATTCAAGGAAAGTGAGATGCACTTCTTGTGTGTGTCACTGACAAGACTAAGAGGGGAGCTGCGTTTACCTGGAAGTAAGAGCTAAAGGAGGCCAGCACAATGCGATGGCAGGGGAACTCCTGTCCTCCACAGCACAGGGTCACATCACAGAAGGCGTTGTTGAGCCGCAGGCTGTTGAGGCCCTGCAGGACAGTGTTGGAGTGCCGGGGCTCCACAAATAGGTAATCCTCACTGCTCAGAGAGGATGGAGgggcggcggcagcagcagcggcgcTGGCGTCCTCCTGGATCGGATAGGTGACGTTTATAGTGGACGGCGAGGGCAAACCGGCGTTGACAGCAAATATTTCAGCCATGTCTCACTTTGCTCGGTAAGCCTGCGAGGTTAGTAGAGGCAAAACGGACAAGATAAGTTAGGACACCTTGACGACATATTCTCACTTTAGGTAAAACAAACCACCGATTTGAATATTAGTAGTAGTCCTCAGTAAGTTAACTCTAATTGATGAGTGATATTTGTAAAGTCGGGGGGATAAGCAACAAGCGGAGAGACGATCTGAGATTGTCTATTAGCTCACTAATGAGGCTTAGCAGAGCAGACGAGCCGTTACATCGCGAGTAAAACGAATCCGTCATTTGAGAAGTATTACTGCTACACACCAGGAGCACACAGGTGAGACAACGCTGTTACCTGACAGACATAATCGTGACCACTTTGACGCGAGCCCACTCTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209226 lncRNA downstream 29235 12735503 ~ 12737463 (-) False LOC120575506
TU209206 lncRNA downstream 87588 12677493 ~ 12679110 (-) True LOC120574720
XR_005641892.1 lncRNA downstream 87608 12677555 ~ 12679090 (-) False LOC120574720
XR_005641890.1 lncRNA downstream 198002 12568219 ~ 12568696 (-) True LOC120574718
XR_005641891.1 lncRNA downstream 198888 12567178 ~ 12567810 (-) True LOC120574719
TU209257 lncRNA upstream 806 12769409 ~ 12770122 (-) True G154438
TU209269 lncRNA upstream 10412 12779015 ~ 12781445 (-) True G154446
TU209357 lncRNA upstream 102955 12871558 ~ 12953388 (-) False G154515
TU209363 lncRNA upstream 105757 12874360 ~ 12931319 (-) True G154517
XR_005641887.1 lncRNA upstream 163130 12931733 ~ 12938664 (-) True LOC120574707
XM_039823968.1 mRNA downstream 6642 12753470 ~ 12760056 (-) True LOC120574003
XM_039823969.1 mRNA downstream 17538 12746817 ~ 12749160 (-) True LOC120574004
XM_039823970.1 mRNA downstream 17548 12746817 ~ 12749150 (-) False LOC120574004
XM_039826336.1 mRNA downstream 29215 12735444 ~ 12737483 (-) True LOC120575506
XM_039825577.1 mRNA downstream 39674 12694885 ~ 12727024 (-) True LOC120575015
XM_039825827.1 mRNA upstream 75793 12844396 ~ 12853731 (-) True cdr2a
XM_039825364.1 mRNA upstream 92749 12861352 ~ 12863585 (-) False si:ch211-139g16.8
XM_039825363.1 mRNA upstream 92749 12861352 ~ 12863585 (-) True si:ch211-139g16.8
XM_039825367.1 mRNA upstream 105773 12874376 ~ 12878214 (-) False LOC120574878
XM_039825366.1 mRNA upstream 105773 12874376 ~ 12878214 (-) True LOC120574878
XR_005641884.1 other downstream 201227 12427504 ~ 12565471 (-) False cep112
unassigned_transcript_847 other downstream 1279773 11486854 ~ 11486925 (-) True trnaq-cug_14
TU208722 other downstream 1541152 11203450 ~ 11225546 (-) True G154033
TU208632 other downstream 1629216 11110968 ~ 11137482 (-) False tnrc6c1
XR_005641866.1 other downstream 1686092 11078676 ~ 11080606 (-) False LOC120574486
unassigned_transcript_848 other upstream 74290 12842893 ~ 12842974 (-) True trnal-uag_2
XR_005641885.1 other upstream 187919 12956522 ~ 12972810 (-) False iqck
TU209391 other upstream 204729 12973332 ~ 12979685 (-) False sun1
XR_005641817.1 other upstream 566846 13335449 ~ 13421951 (-) False prkar1b
TU209766 other upstream 1282135 14050738 ~ 14057312 (-) False med9

Expression Profile