RNA id: TU209511


Basic Information

Item Value
RNA id TU209511
length 301
lncRNA type intronic
GC content 0.26
exon number 1
gene id G154601
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 13254473 ~ 13254773 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atacactgaaaaaaagaacatgttGGATTAATTTAATTCAATAGTGGACATTGGTTGCACACAAATGTTTTGCTTTGTCAGCAACTTAAACAATTGAGTTAAATTAACACAAGTTATTCATGTTCAATAAAcctgtgtattttgtgttgataCAGTGtgattaaaatatgttttgataaagtaattggaacattttaatCCTTCACAATTGTATCACTTTATTTCAACACTATTCAATAAATTTTACTTTAATACTATTTGGTCACTTAAATACTACACGTTTCTTTCATATTACATGTTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG:

id description
ko00630 Glyoxylate and dicarboxylate metabolism
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209510 lncRNA downstream 1267 13252924 ~ 13253206 (-) True G154600
TU209357 lncRNA downstream 301085 12871558 ~ 12953388 (-) False G154515
TU209356 lncRNA downstream 301085 12947199 ~ 12953388 (-) True G154515
XR_005641887.1 lncRNA downstream 315809 12931733 ~ 12938664 (-) True LOC120574707
TU209363 lncRNA downstream 323154 12874360 ~ 12931319 (-) True G154517
TU209628 lncRNA upstream 334751 13589524 ~ 13631836 (-) False tfap4
TU209669 lncRNA upstream 401245 13656018 ~ 13692471 (-) True G154713
TU209678 lncRNA upstream 500891 13755664 ~ 13827791 (-) False G154717
TU209680 lncRNA upstream 500891 13755664 ~ 13827791 (-) False G154717
TU209682 lncRNA upstream 500891 13755664 ~ 13827791 (-) False G154717
XM_039825515.1 mRNA downstream 40753 13194950 ~ 13213720 (-) True LOC120574974
XM_039825517.1 mRNA downstream 44655 13194950 ~ 13209818 (-) False LOC120574974
XM_039825516.1 mRNA downstream 47977 13194950 ~ 13206496 (-) False LOC120574974
XM_039825513.1 mRNA downstream 68585 13160825 ~ 13185888 (-) False LOC120574973
XM_039824085.1 mRNA upstream 69462 13324235 ~ 13343615 (-) True pdgfab
XM_039824086.1 mRNA upstream 69462 13324235 ~ 13343614 (-) False pdgfab
XM_039824082.1 mRNA upstream 101453 13356226 ~ 13421951 (-) True prkar1b
XM_039824084.1 mRNA upstream 101453 13356226 ~ 13412053 (-) False prkar1b
XM_039824083.1 mRNA upstream 101453 13356226 ~ 13410144 (-) False prkar1b
TU209391 other downstream 274788 12973332 ~ 12979685 (-) False sun1
XR_005641885.1 other downstream 281663 12956522 ~ 12972810 (-) False iqck
unassigned_transcript_848 other downstream 411499 12842893 ~ 12842974 (-) True trnal-uag_2
XR_005641884.1 other downstream 689002 12427504 ~ 12565471 (-) False cep112
unassigned_transcript_847 other downstream 1767548 11486854 ~ 11486925 (-) True trnaq-cug_14
XR_005641817.1 other upstream 80676 13335449 ~ 13421951 (-) False prkar1b
TU209766 other upstream 795965 14050738 ~ 14057312 (-) False med9
XR_005641939.1 other upstream 1280198 14534971 ~ 14543992 (-) False LOC120574989
TU210021 other upstream 1535283 14790056 ~ 14790778 (-) False LOC120574213
TU210042 other upstream 1541253 14796026 ~ 14828220 (-) False LOC120574214

Expression Profile