RNA id: TU209628


Basic Information

Item Value
RNA id TU209628
length 2924
lncRNA type sense_over
GC content 0.40
exon number 2
gene id tfap4
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 13589483 ~ 13631836 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGATTTCTTGattattatgtatgtatatttccACAATAAGTAATTTTATTGTATATTTGGAACAGAAATGAATACACAAGTTGTATCAAATACAACTTTATtaaacaattttcttttcattgaCATTATTATCAATATCGTAATAAAATTCCTCTAAAACAGGAGAACACCGCTATGTTGTACCAATTGTAGACTTTTACAACTCTAAAACTCTGCATGTTCAACCATAGAACATGATGCCacgaaaaatatattttcatataattttttttcatatagTGTGTAACTTCTGTATCTTATCTATAATAAAAAGGCActtgaaaaaattaaaatactcaCAATATCTCACAAATGTGCAAAAAACATAACTTGGAACAGGCCTTGCATGGCCTTAGTCTTATCATTAACCCTTTGTGCAACACTGTGGCACTTCAGTCAGTGTCACCCCTCTACAATGACACtgacttagctagctaacacaaATTTTGTGCCCTGGATCTCGGTTCCGCTTTTCATAGCAGTAAGTGAGGGTAACTTTAAAATCTCCAGGAGCAAGTACCGCTTTTATACTgtcaaaacacaaaatgacGTCAAATTCTGACATTTAAGTGACTGAGGATGATTTTTACAATTCTTGGTTCCCAAAACAACTGATGAATTATGCTGTACATAAAGGATGTGGCAGCATCTCCATATCTAAACACTCTATGAGGGGAACAAAAGTGCAGTTTATTACAGACTGAGCTCAAAGGGTTAATGGATCATACAGCTTATTTGATATTGAAAAGATGTGGACCCTGTGTGGATCCGTGTCATATTATTCAGCTTTCTGCTGCCTCTTTCTGTCCCTGGCTTCGACCTgcagaggagagacagacagacagacagggagaagaGCCGCTGCATCTCTGGGTTTTGCTGTTGCCAGGGGAACCATGTCTAGCCTACTTAACACCTGTTTCTGATGACATCACATGCCAGGATTGTCCACTCACAATGAGAGATTCACTTCAATGCCCAGCCTAAACccagagactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagatttaGCGTTTTGAATCAGCAGGGCTCAATGGTGTCCCAGACTCTGGCAGTCTGCAACAACACCGCTTTTACCTTGAAATAAAGGCACGTGTGTATGTGCACacaacactcacacatacaaatgTGGCTGACATACAATCACTTGTTAGCTCAAATTTAGGGCTTGTTTATTTAGCCCTTAACGTTGTTGTTTCTTGTCCAAATGTTGAGACATCTATCAAAGCAGATAATACTTTAAATATGAGGAACATGCCCGGTAAAATTGTTTGAATGTGCCATAGAGGTGACTGGGTTGACCACACATGCTCTATGCATTTACTTGCATAGATTATTTGTCCTCTTGCGTGCTCTTTGTCTAGCGTACCATGCTATTTACACGTCACTGCTCTGATCATATGTTTTGCCTGGAACTGTTGGTTGACAGACATTAAGACATGGAGCTGAGAGAGGCAGCAGCTTGCCTTACTAATAGCCCGTGGGTGCAGGGAGGCACTGTGAAGCCAACCTTAACAGAACCCCCGGGGTCTGAGAGACGTACCTTAACACTTAATCTGCGCCGTTTGGTGGCCACTGGAATCCCTCCGGTTTTCCCCTCAGCTTTCCAAACAGGCTTGTCAACACCCAGGGTGTGTTAGAATATATACTCACAGTTATTATGTCTATTTCACTTATGCTTTGTTTGATTATGTTTGCCACAAACATGGAACAGGTTGCTGGTATACCAATTACATTCAAGCACTCCTGATATTTGTTTGATATAAgtattgaaaatgtatttgcaaCCATTGGCCCCTTCGTGTGCATAAAAGCCAGATGTGTGGGGTAAAAATTTCCATATTGAAATGTTGACATTCCATAAAATGTTACAGTTACTTTTCAAAAGTGAAACCTGGTCTATTTAGAGACTACACTTACATTTAGTGCTTTTGACACATCACTGCTATTTTAGAATTGCGTTAAATGACAAACTCATTATTAGAATCCCCTGCATTAATGCATAGATGGAGCTTTGAACTGCTGGACAGATAATGCGTTCAATTGAACGCACCACATCTATCATGATTATGTCATGGAATTGccctttaaagaaatattgatGTCAGCTGCACTGAAAATGAGTGACGCATCTGTCAAATTAAATCATGGGACATTTTCCTAGTACTTATCACTTTAGGCAGGGGATTCCTGGATATGGAAAACGTGTTTTGAAAGCTCTGCTTTTTACTCTTGAGTATCTGCATTTGATAGTTTTCTGCTGAAACCCAGAGCTGTTCTATTTCCATCTGTGTTTTACACTCTGTTCTGTGTGTTACGAAACGTTACATTGACATATCAGCTTGTCAGATGAGTGGGTTGGGCCTGGGGATAATTAAATGGGGTCAAAATTACAAAGCACTTACTGTACTATACTGGAGTCTGCCTCTTTCTTTTGTATAAAGGGGCATCTCCTCAGCTGAAGCTCTTTAGGATATGATTAAAAGCCGCACAGCTGTGTATCCCCCTTTTCCTCCATGTCCAGACCTCCTACATCTTGTCCTGTTAGCCCCtcatcttttttgttgttttttgcaaaATCCTTTATGCCATCTTTGTTTATCTATTGTCATTATATCTTGTGTCCCTTTTACATTTCGCagctccctcctctccctctccttttgtCTGTTCTCtgtaatcttttttttgttaaccTTTCGGTGCATATGGTCGTCAAGAAgctattttttgtctttgttttgtttttaagagaaATGTTTTGGGGATAAAGAGGCTTGTGCCTTTGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209511 lncRNA downstream 334751 13254473 ~ 13254773 (-) True G154601
TU209510 lncRNA downstream 336318 13252924 ~ 13253206 (-) True G154600
TU209357 lncRNA downstream 636136 12871558 ~ 12953388 (-) False G154515
TU209669 lncRNA upstream 24182 13656018 ~ 13692471 (-) True G154713
TU209678 lncRNA upstream 123828 13755664 ~ 13827791 (-) False G154717
TU209680 lncRNA upstream 123828 13755664 ~ 13827791 (-) False G154717
TU209682 lncRNA upstream 123828 13755664 ~ 13827791 (-) False G154717
TU209688 lncRNA upstream 142266 13774102 ~ 13775989 (-) True G154723
XM_039826325.1 mRNA downstream 2770 13572655 ~ 13586754 (-) False srl
XM_039826324.1 mRNA downstream 2770 13572655 ~ 13586754 (-) True srl
XM_039824660.1 mRNA downstream 21725 13532771 ~ 13567799 (-) True LOC120574398
XM_039824681.1 mRNA downstream 57805 13470698 ~ 13531719 (-) True crebbpb
XM_039824661.1 mRNA downstream 119288 13460903 ~ 13470236 (-) True trap1
XM_039825280.1 mRNA upstream 306 13632142 ~ 13636162 (-) True pam16
XM_039825272.1 mRNA upstream 4973 13636809 ~ 13748602 (-) True coro7
XM_039823951.1 mRNA upstream 125914 13757750 ~ 13764536 (-) False hmox2b
XM_039823949.1 mRNA upstream 125914 13757750 ~ 13764506 (-) True hmox2b
XM_039823950.1 mRNA upstream 125914 13757750 ~ 13762385 (-) False hmox2b
XR_005641817.1 other downstream 167573 13335449 ~ 13421951 (-) False prkar1b
TU209391 other downstream 609839 12973332 ~ 12979685 (-) False sun1
XR_005641885.1 other downstream 616714 12956522 ~ 12972810 (-) False iqck
unassigned_transcript_848 other downstream 746550 12842893 ~ 12842974 (-) True trnal-uag_2
XR_005641884.1 other downstream 1024053 12427504 ~ 12565471 (-) False cep112
TU209766 other upstream 418902 14050738 ~ 14057312 (-) False med9
XR_005641939.1 other upstream 903135 14534971 ~ 14543992 (-) False LOC120574989
TU210021 other upstream 1158220 14790056 ~ 14790778 (-) False LOC120574213
TU210042 other upstream 1164190 14796026 ~ 14828220 (-) False LOC120574214
TU210040 other upstream 1220103 14851939 ~ 14857557 (-) False LOC120575102

Expression Profile