RNA id: XM_039825279.1


Basic Information

Item Value
RNA id XM_039825279.1
length 4320
RNA type mRNA
GC content 0.46
exon number 7
gene id tfap4
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 13589483 ~ 13631836 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acacacacacacacggtcatgcagagagagagagaaagcagaggggagggagaaagagagagagagagagaggacgagCGCCACACACAACGAGGGAACCCCATCAGCTGGAAGTCGAGTAACATTACAACTCTCAGCAGCCTGAAACTACTACACTACACAGACGAGGGATTCATATCTTTTCTGAGGTTTTAACCCGCCTCGGATCACGGGATTTCTCGTCTCTAAcgtcatattttttttcttctattctgCGGAGactgtttgctgtttttttaggAGTGTGGGGGGGGCAAACTGGCGAGAGGCGAGCATGGAGTATTTCATGGTACCAGCTCAGAAGGTGCCCTCCTTGCAACATTTCAGGAAAACGGAGAAAGAAGTGATTGGAGGTCTTTGCAGTCTGGCCAACATTCCTCTGACCCCAGAAACAGCCCGGGACCAGGAAAGGCGAATTCGCAGAGAGATTGCTAACAGCAACGAGCGTCGGCGTATGCAGAGCATCAATTCTGGATTCCAGTCACTTAAAACACTCATCCCACACAGCGATGGAGAGAAGCTCAGTAAGGCTGCCATCCTGCAACAGACAGCGGAGTACATTTTTACTTTGGAGCAGGAGAAGACGCGGCTATTGCAGCAGAACAGTCAGCTCAAACGAATCATACAAGAGTTAAGTGGTTCCTCCCCAAAGAGACGGCGTGCGGAGGAGAAAGATGAAGGGATTGGCTCACCAGACATTCTAGAGGAGGAGAAGACTGAGGACTTGAGGAGGGAGATGATTGAGTTAAGGCAGCAGCTGGAGAAAGAGCGCTCGGTCAGGATGTTGCTGGAAGATCAGATGCGTTCCCTGGATGCCCAGTTGTACCCAGAGAAACTGAAGGTGTTCACCCAGCAGGTCCAGGAGCACCAGACTCCAACACAGAGCCTTGTCCGTCTGCAGCAGCACAAACAGCTGGAGAGGGACCTCACTCCGGCCCACAGCCCACAGGTGTTGGCCCCGGCTACCCCGCCTGCACCTACACACCATGCCACAGTCATCGTCCCTGCGCCTTTCCAGCCTCCCCAGCCCCATCATGTCACCGTGGTAACCATGGGCCCGACATCAGTTATCAATGCAGTGTCCACATCTCGACACAACCTGGACACCATCGTTCAAGCAATCCAGCACATCGAGGGCACCCAGGGAAAGGGTTGTGTCGGCGAGGAAGAGCAGCGGAGAGCGGTCATCGTCACTTCAGGGCGTGTCCCCTCCGACGCTGCGGGCTCAGACACGGCCTCAAACAGCGACGGGCCCGACGACTGTTCACTGCCCTGAGTTCATCCTCGAAGTCTCGCACGCCGTACACTTACATACgcgcacacacttacacacaaaaggCCCCAGCAGACCAGGGCTACAGGAGGCTTCAAACCCACAGCACTCTTGTTTAGTGGACATTAATAGGGCTGGTAGACAGATTGAAGCACtcgttgttttgtttcttttcagtACACTCTTCCATGTTGTACTTTGATAGGCAGCCCAAATAGGTTTACACTTAGACACTCATACATGCAGTCTCTCTTGCGTCTTTTTCTCTGCTTATCTTTAGCCCCctgctctccacacacacaagctcttGTCTGTTCATTAGTTTATAGAAAGGTTGTTAGAGTGGCTACTTCACCGACTGATCCATAAATGCTCCGTCAGAATATCTGCTAAACATCACCATTATCACCAGGACTGTTCTCTTTTATTCGGCCCTGAAGCAATGGGACTGATCCACGAAACAGGAGTCAAAGAAGCCAGCAGTGTGGGTCATCACCACCCAACAGCagtgcatttttgttttaagaTGAACATCCTCCTTCTCTGAAGCTGTTTGGAGAGACACTGTAAGCTAACAAGGCTGTCTCAAAGTTCCACCTTTTAGGCTTCTGGATGAAAGAATATGTTGTTTTACTCTTGTGAAGTCtactttttcatgttttgtttctcTAAGGCTCCCTCAGCCAGCAAGTTAAGCGATTGTACtggaaaaaaacccacaaaagaGCACCACAACGAGAGGAATTAAAAAGCAGTTTTCATGGCTGACTGGTGCTCACAGGAAATGAAGCGAAGCTCGGGAGGAGAGAGTGTGCTTACTGGTTCTCAGCTctattctttttgttttgtttgttgccaTTTTTACTGGGCTGGGTTCCCAGTAAGTTCACATATGTATTGGCATGTTCTTCTTTTTACTCATGGCCTGACAAACTAATATCAGTGCTTTGGCATTTCTTGACACGCTCCCCTCTTGAATTTAAAAGCACTTGGTTAAATAAGATAATCTGAGGgcactcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagatttaGCGTTTTGAATCAGCAGGGCTCAATGGTGTCCCAGACTCTGGCAGTCTGCAACAACACCGCTTTTACCTTGAAATAAAGGCACGTGTGTATGTGCACacaacactcacacatacaaatgTGGCTGACATACAATCACTTGTTAGCTCAAATTTAGGGCTTGTTTATTTAGCCCTTAACGTTGTTGTTTCTTGTCCAAATGTTGAGACATCTATCAAAGCAGATAATACTTTAAATATGAGGAACATGCCCGGTAAAATTGTTTGAATGTGCCATAGAGGTGACTGGGTTGACCACACATGCTCTATGCATTTACTTGCATAGATTATTTGTCCTCTTGCGTGCTCTTTGTCTAGCGTACCATGCTATTTACACGTCACTGCTCTGATCATATGTTTTGCCTGGAACTGTTGGTTGACAGACATTAAGACATGGAGCTGAGAGAGGCAGCAGCTTGCCTTACTAATAGCCCGTGGGTGCAGGGAGGCACTGTGAAGCCAACCTTAACAGAACCCCCGGGGTCTGAGAGACGTACCTTAACACTTAATCTGCGCCGTTTGGTGGCCACTGGAATCCCTCCGGTTTTCCCCTCAGCTTTCCAAACAGGCTTGTCAACACCCAGGGTGTGTTAGAATATATACTCACAGTTATTATGTCTATTTCACTTATGCTTTGTTTGATTATGTTTGCCACAAACATGGAACAGGTTGCTGGTATACCAATTACATTCAAGCACTCCTGATATTTGTTTGATATAAgtattgaaaatgtatttgcaaCCATTGGCCCCTTCGTGTGCATAAAAGCCAGATGTGTGGGGTAAAAATTTCCATATTGAAATGTTGACATTCCATAAAATGTTACAGTTACTTTTCAAAAGTGAAACCTGGTCTATTTAGAGACTACACTTACATTTAGTGCTTTTGACACATCACTGCTATTTTAGAATTGCGTTAAATGACAAACTCATTATTAGAATCCCCTGCATTAATGCATAGATGGAGCTTTGAACTGCTGGACAGATAATGCGTTCAATTGAACGCACCACATCTATCATGATTATGTCATGGAATTGccctttaaagaaatattgatGTCAGCTGCACTGAAAATGAGTGACGCATCTGTCAAATTAAATCATGGGACATTTTCCTAGTACTTATCACTTTAGGCAGGGGATTCCTGGATATGGAAAACGTGTTTTGAAAGCTCTGCTTTTTACTCTTGAGTATCTGCATTTGATAGTTTTCTGCTGAAACCCAGAGCTGTTCTATTTCCATCTGTGTTTTACACTCTGTTCTGTGTGTTACGAAACGTTACATTGACATATCAGCTTGTCAGATGAGTGGGTTGGGCCTGGGGATAATTAAATGGGGTCAAAATTACAAAGCACTTACTGTACTATACTGGAGTCTGCCTCTTTCTTTTGTATAAAGGGGCATCTCCTCAGCTGAAGCTCTTTAGGATATGATTAAAAGCCGCACAGCTGTGTATCCCCCTTTTCCTCCATGTCCAGACCTCCTACATCTTGTCCTGTTAGCCCCtcatcttttttgttgttttttgcaaaATCCTTTATGCCATCTTTGTTTATCTATTGTCATTATATCTTGTGTCCCTTTTACATTTCGCagctccctcctctccctctccttttgtCTGTTCTCtgtaatcttttttttgttaaccTTTCGGTGCATATGGTCGTCAAGAAgctattttttgtctttgttttgtttttaagagaaATGTTTTGGGGATAAAGAGGCTTGTGCCTTTGTAAAGACAGAATAATAAAGTTTGTACTTTGTTTTTTACGCATTGG

Function

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09108 TFAP4; transcription factor AP-4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209511 lncRNA downstream 334710 13254473 ~ 13254773 (-) True G154601
TU209510 lncRNA downstream 336277 13252924 ~ 13253206 (-) True G154600
TU209356 lncRNA downstream 636095 12947199 ~ 12953388 (-) True G154515
XR_005641887.1 lncRNA downstream 650819 12931733 ~ 12938664 (-) True LOC120574707
TU209363 lncRNA downstream 658164 12874360 ~ 12931319 (-) True G154517
TU209669 lncRNA upstream 55964 13656018 ~ 13692471 (-) True G154713
TU209678 lncRNA upstream 155610 13755664 ~ 13827791 (-) False G154717
TU209680 lncRNA upstream 155610 13755664 ~ 13827791 (-) False G154717
TU209682 lncRNA upstream 155610 13755664 ~ 13827791 (-) False G154717
TU209688 lncRNA upstream 174048 13774102 ~ 13775989 (-) True G154723
XM_039826325.1 mRNA downstream 2729 13572655 ~ 13586754 (-) False srl
XM_039826324.1 mRNA downstream 2729 13572655 ~ 13586754 (-) True srl
XM_039824660.1 mRNA downstream 21684 13532771 ~ 13567799 (-) True LOC120574398
XM_039824681.1 mRNA downstream 57764 13470698 ~ 13531719 (-) True crebbpb
XM_039824661.1 mRNA downstream 119247 13460903 ~ 13470236 (-) True trap1
XM_039825280.1 mRNA upstream 32088 13632142 ~ 13636162 (-) True pam16
XM_039825272.1 mRNA upstream 36755 13636809 ~ 13748602 (-) True coro7
XM_039823951.1 mRNA upstream 157696 13757750 ~ 13764536 (-) False hmox2b
XM_039823949.1 mRNA upstream 157696 13757750 ~ 13764506 (-) True hmox2b
XM_039823950.1 mRNA upstream 157696 13757750 ~ 13762385 (-) False hmox2b
XR_005641817.1 other downstream 167532 13335449 ~ 13421951 (-) False prkar1b
TU209391 other downstream 609798 12973332 ~ 12979685 (-) False sun1
XR_005641885.1 other downstream 616673 12956522 ~ 12972810 (-) False iqck
unassigned_transcript_848 other downstream 746509 12842893 ~ 12842974 (-) True trnal-uag_2
XR_005641884.1 other downstream 1024012 12427504 ~ 12565471 (-) False cep112
TU209766 other upstream 450684 14050738 ~ 14057312 (-) False med9
XR_005641939.1 other upstream 934917 14534971 ~ 14543992 (-) False LOC120574989
TU210021 other upstream 1190002 14790056 ~ 14790778 (-) False LOC120574213
TU210042 other upstream 1195972 14796026 ~ 14828220 (-) False LOC120574214
TU210040 other upstream 1251885 14851939 ~ 14857557 (-) False LOC120575102

Expression Profile