RNA id: TU209680


Basic Information

Item Value
RNA id TU209680
length 2061
lncRNA type sense_over
GC content 0.35
exon number 3
gene id G154717
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 13755664 ~ 13827791 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTGCATAGagcattatttaatttaaaaagaatagAGATACATATACAGTTGACAAGGTCAGTTTCATGGTACAGTACACATTTACAATGATGTAAATTCCCTTTTCAAATATGATTCACTGTATTTCAGCATAACTCCATCCTTCAATTTCAGCAGTGCAAACCTGTATATTTCTCCTCAAACTACATATCTAACATTGCAATTGATTCAAGTCATACATGTAATGAGAAACAAATTATGAAAATACACAAGCAAAAGAGTAAAAATTAGAAGGTTAAATTCTTTAAAGACCAATAAGCCACATATCCGTGTCTTTCTAGAGTGTCCGCCTCTAAGTTTATAACTGCGAATGCTTTTTGCTTTTCCTGCAAGACCGTAAATACATTCATCTCACTTCTGTGAAGTCAGAGTGATTTTTCGAGAGTAGGAATGTCATTTGTGCATTTGTACAGTTAATGTGATTGTTGATTCATTCCAGATTATATTATTGATCTTTAACATGGATGAAAAGCAAGAAACTTCTCATCAATGTGGGGGATATATTGTTTTGAAACTTCAAAAGTTATTCAAAATATTCttacacaatacatacatatttttacaAGTTCTTTAAAGTACAAACAAGGCTTTAAGATAGTGATACATTGGGAACGCTCAGACATTAGGTTCATAGTAGCACATCCAACTGAAAGAGGAACAAACATTGCGCTGATCATGCTTCCTCAGAACAAGGTATCTATTTGTACGCAGAGGATTTTTGTTACGTTTTTACCCTCTATACTATTgttgggcctttttttttttttaatgcatttccTGACCTTCAATGAAGGAGCAGCTCTATACAGCAGTAAAGGTTGTCCCCACAATATTTAAGGACTATCATCATAGCACAGTTTAACTATAGTCTGGATGAAATCAGGAATCATGagttgccacacacacacattcatttaatttatatcCACCAAATTGTACATTTCAAAGATGTAAAAGTATTGCtacaaaaaagtttttaaatcaaattttaagcacacacacacacacacacactcacacgcacgcaGTTTTTAGGCCCAAATCAACCCCATGCCGTCTGATACAACGTGATTTAAAGTCAAGACATCCCACAACATTTGAAAGTAATCCACTGCGTGACACAATGATTTATTTCTAAATAGCTTCCATGTAAACTGTAATTGGCTGGATGTCCACATGGTAACACActcttggtggaacttgtttggcaggaaaaccaaaacattGTTTCCCAAGACATGGACAATGGAGGCGTGTTAAAATGTACTCCGGACTAAATGTACTTTGAGAATTAATATTCAATGAGGACGGTCTTCTAGTAATCGCTAGCAGCTCTCTGCTTCTCTAGTATCATGCACTCTGTTAATCATATTGTATACATGCATTCATTAATTTGCCTTTAAAAGAGTAAATGTTCTGCTCTGGCCTGAATGAGTTAAGTGGTTTTTAGTACCATGAACACATCACATTATTTACATCTGGCAACAACATTAAGAGGCTCTCAAGGATAACCAGGCATTTTGTACAGGGTAATATAAAGAAACAAGAACCCTCTTTAGTTAGATAAGGCGCAAAGGTGTGCAAACAATTTCATTCACGTATCAAATGGAGTGGTTTATTCTCTTGTGAtgatcacagaaaaaaaaagcacaaactcTTGGTAACATAAGCAATCAAATAAAatcataaataacaaaaaagacGAGctgtacatacacaaaaaaactctgtcaCACATAATTCAGAGTAGTGGTAGTATCTAGTAAGTGGTTTCATTGTCTTTGACCTCACTAAAAAAAGTGCAGAGTTCATTACTTGGTATATTCATCATCCCCCACACGTCATAATTACAATTCTACTTCTTTGTCACACAATAACAACGGTATGAATGacccaacaaaacacacactgacttgATACAGTAGTAGAAAGGCTGAAGTTGATGTGACtggcccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209669 lncRNA downstream 63193 13656018 ~ 13692471 (-) True G154713
TU209628 lncRNA downstream 123828 13589524 ~ 13631836 (-) False tfap4
TU209511 lncRNA downstream 500891 13254473 ~ 13254773 (-) True G154601
TU209510 lncRNA downstream 502458 13252924 ~ 13253206 (-) True G154600
TU209356 lncRNA downstream 802276 12947199 ~ 12953388 (-) True G154515
XR_005641993.1 lncRNA upstream 108977 13936768 ~ 13946397 (-) True LOC120575453
TU209765 lncRNA upstream 228676 14056467 ~ 14057312 (-) False med9
TU209781 lncRNA upstream 250723 14078514 ~ 14099281 (-) True G154788
TU209785 lncRNA upstream 257951 14085742 ~ 14087766 (-) True G154791
TU209820 lncRNA upstream 498182 14325973 ~ 14326936 (-) True G154825
XM_039825272.1 mRNA downstream 7062 13636809 ~ 13748602 (-) True coro7
XM_039825280.1 mRNA downstream 119502 13632142 ~ 13636162 (-) True pam16
XM_039825279.1 mRNA downstream 155610 13589483 ~ 13600054 (-) True tfap4
XM_039826325.1 mRNA downstream 168910 13572655 ~ 13586754 (-) False srl
XM_039826242.1 mRNA upstream 32359 13860150 ~ 13863534 (-) False LOC120575446
XM_039826241.1 mRNA upstream 32359 13860150 ~ 13863533 (-) True LOC120575446
XM_039826248.1 mRNA upstream 56546 13884337 ~ 13950756 (-) True LOC120575451
XM_039823816.1 mRNA upstream 228623 14056414 ~ 14057354 (-) True med9
XM_039824745.1 mRNA upstream 271664 14099455 ~ 14106823 (-) True LOC120574465
XR_005641817.1 other downstream 333713 13335449 ~ 13421951 (-) False prkar1b
TU209391 other downstream 775979 12973332 ~ 12979685 (-) False sun1
XR_005641885.1 other downstream 782854 12956522 ~ 12972810 (-) False iqck
unassigned_transcript_848 other downstream 912690 12842893 ~ 12842974 (-) True trnal-uag_2
XR_005641884.1 other downstream 1190193 12427504 ~ 12565471 (-) False cep112
TU209766 other upstream 222947 14050738 ~ 14057312 (-) False med9
XR_005641939.1 other upstream 707180 14534971 ~ 14543992 (-) False LOC120574989
TU210021 other upstream 962265 14790056 ~ 14790778 (-) False LOC120574213
TU210042 other upstream 968235 14796026 ~ 14828220 (-) False LOC120574214
TU210040 other upstream 1024148 14851939 ~ 14857557 (-) False LOC120575102

Expression Profile