RNA id: XM_039823816.1



Basic Information


Item Value
RNA id XM_039823816.1
length 716
RNA type mRNA
GC content 0.46
exon number 2
gene id med9
representative True

Chromosome Information


Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 14050738 ~ 14057354 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ttaaagagaggtgcctggtcgggctagaactctatGATGTGTGACGTAATCTACCTGCGCCGCGGAGTAGGGAGCGTGATGGCGGTGTCTCAACCAATGCAAGACAAAGAGAGCGATGATTGCTCTTTGCTGCCTTTAGTTCATGATATTATAAAATGCATGGACAAGGACAGCCAGGATGTTCACCAAGAACTGGCCAAGCTGAAGACAAAGATCCAGGAGGCTCGGGAGCAGATATCTAACATGCCCGGGGTAGACAGCAGTCCgctggagcagcagcagcagctggctACGCTGCGGGAGCAGGTCCGCACCAAGAACCAGCTGCTGCAGAAATACAAAAGTCTGTGCATGTTTGACGTGCCAAAAGCATCATGAAACGGAAGTCTGGATTACTGACTGGAGGAATCTCACACACTCGAGGTGCATTAGGGACGTCACGTTTGTTTTCATCCTCACCCACGGACCAGAGGTGGGATTCAAGAATCCTGGATGGGATGCACGTTTAAATTGCCAAGGACTTATGTTTCCTCAGTTGCATCACAGTGATGTTTTTGAACCTCACATAATGTCCGTATTTTGTCCTTGTTTGCGTTGCGAACTTGGTTATGTAGACCTACTATTTGTATTGAATGGAGGTTTTCAATGTATCATGTTCTCATCTTGTGATATATTTCAATATTCCTATTTTGTAATAAAATGAATTGATTATGAAA

Function


GO: NA

KEGG:

id description
K15149 MED9; mediator of RNA polymerase II transcription subunit 9

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005641993.1 lncRNA downstream 110017 13936768 ~ 13946397 (-) True LOC120575453
TU209680 lncRNA downstream 228623 13755664 ~ 13827791 (-) False G154717
TU209781 lncRNA upstream 21160 14078514 ~ 14099281 (-) True G154788
TU209785 lncRNA upstream 28388 14085742 ~ 14087766 (-) True G154791
TU209820 lncRNA upstream 268619 14325973 ~ 14326936 (-) True G154825
XR_005641944.1 lncRNA upstream 273591 14330945 ~ 14337074 (-) True LOC120575037
TU209899 lncRNA upstream 397708 14455062 ~ 14457036 (-) False LOC120574967
XM_039826248.1 mRNA downstream 105658 13884337 ~ 13950756 (-) True LOC120575451
XM_039826242.1 mRNA downstream 192880 13860150 ~ 13863534 (-) False LOC120575446
XM_039826241.1 mRNA downstream 192881 13860150 ~ 13863533 (-) True LOC120575446
XM_039823951.1 mRNA downstream 291878 13757750 ~ 13764536 (-) False hmox2b
XM_039823949.1 mRNA downstream 291908 13757750 ~ 13764506 (-) True hmox2b
XM_039824745.1 mRNA upstream 42101 14099455 ~ 14106823 (-) True LOC120574465
XM_039825773.1 mRNA upstream 227820 14285174 ~ 14288819 (-) True LOC120575134
XM_039824079.1 mRNA upstream 326748 14384102 ~ 14417141 (-) False rnf213a
XM_039824077.1 mRNA upstream 326748 14384102 ~ 14417141 (-) True rnf213a
XM_039824078.1 mRNA upstream 327472 14384826 ~ 14417141 (-) False rnf213a
XR_005641817.1 other downstream 634463 13335449 ~ 13421951 (-) False prkar1b
TU209391 other downstream 1076729 12973332 ~ 12979685 (-) False sun1
XR_005641885.1 other downstream 1083604 12956522 ~ 12972810 (-) False iqck
unassigned_transcript_848 other downstream 1213440 12842893 ~ 12842974 (-) True trnal-uag_2
XR_005641884.1 other downstream 1490943 12427504 ~ 12565471 (-) False cep112
XR_005641939.1 other upstream 477617 14534971 ~ 14543992 (-) False LOC120574989
TU210021 other upstream 732702 14790056 ~ 14790778 (-) False LOC120574213
TU210042 other upstream 738672 14796026 ~ 14828220 (-) False LOC120574214
TU210040 other upstream 794585 14851939 ~ 14857557 (-) False LOC120575102
TU210041 other upstream 794585 14851939 ~ 14857557 (-) True LOC120575102

Expression Profile