RNA id: TU210040


Basic Information

Item Value
RNA id TU210040
length 3346
RNA type TUCP
GC content 0.39
exon number 3
gene id LOC120575102
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 14851939 ~ 14857580 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACACAACTGTCGCTACTGGCTGTGGTTtttatagctagctagctagctaggttaaaCTAAAAGAGGTGTAATTTTACCCGGGCTCTAGTTCTGGCTCTGAGATTGTTACATTGTTATCAAAGAAACAAGGCTAATTTTCTGCAATATGTGCTGTGGTCAGCTAATTAGGTGCATCAGCTAAGAAGGTTAGCTAGCCGTGACGTTAGCTTGTAACCTAACGTTAGCGTTTGTGACTGGCTTTTTAACTAACCTCGCTAGCTTAACGCTAGCTCGGTCTTTATGCAAAATAATAGCCAGTTACCTTAAATTGTCTGTGTAGTTAATTAtaacagattattattttagtgTTGCCAAACTGGTTAGTAGTATCACATCAATATTCAACATGATTGGCTAGTCAGGAAAGATTAGTTTGCTAACTCAGGTGATCGGCCATTGGTCGACAGAAaataagctaacgttaacaagTCGTCAACCGGTCAGGTCCTCCAGTCTGGTCAGAACACATAAAGGATTGAGTTAGTGTCATCATATGTTGACTGAAAACAGGAAACGGCAGCGCAGCGGTGGTGATGAGGAGAGTGGCCACCTGGTGCCTCAAGCcaaaaggcagagcagagctcatcctctctctcctgAGCCAGGCCGAGATGCGTGGGACTCGGAGTCATCCAACagtgagagcagcagcagcatcagcagtCCAGAACATGCAGCTGGGAGCTGTAGCAGTCAGTGTGTTGTGGGCCCCTGCAGTCCCCTCAGCTCCGGGGACTCCCCCGATCTGGCCCGCCCTACAAACCTGGTGTCCTACCTTCAGATCAACCGCATCCTGAAGCATGCCCACTTCCAGAGTCTGCAGAGCCGATGTCAACTTAGAGACACATGACGACCTAATGTCTCTCTGTCAGCCACCAGAGGACAGAGTCCCTGAGGGATGCCAGAGCACCACATGCTGATTCACTTCACTCAGCTCTTCCCATCTCCAGTTACTGTGATATCTTGCAGCTCTACATATCTGTGGATAGAGACCAGCTCCTGGTCAGGTatctggaggggggggggggattcattattcaaataaatcaaaagtGATAATCATTTTAGCAATAATAACTGTGtgatcaacttaaaaaaaatttgtgATCCACCTGATTTCTGACCAGTCTGGTTTACATGCTGCTCTCGGAGCCTTATTGTGACTGattgatgatggtgatgaatCCCTGTGTTTTTTCTTAAATGTTGTATGAAAACAGTGCTACTGAAGCTGCAGAAATGGCACCAAACACAATTTTAGGCCGGTCAGTGTGACTCGTTTAGTCTCATAGTAGGGTACTTGGGTTGTATAATGCTGAATCTGATGTCTGTGTAAGTACATGGACCAGTCTCAGGGAGGATTTGCACTTGTCTTGGACTGCTCATTTGCTTTCATGTTCAGACAGGGATTCCTTTACAGGGACCTGTAGAAGCCATGGTGTTACCTTGGCCAAGGAGGTTTTGAcgttatttttttctgtccttATTTTGTTAGTTTATAGATTATTTAGATTTAAGTTAAATTTAGTGGAAAGTCAGGCGATGGAAGAAAGGTTTCGGTTTTTGCCCAGTTTGGATTTCATAATACTGCAAGATTGGAAATTTTGAACACTTGCTATTTTTCCATCAACTACTGCACATAATTGGATATACAAATGTGGCTCATTAAGCCTATATTTAACAATTATTACAGTATGGTTATGGTTCCTGATGCAGATACGCATTTTATGAATATAGttgattattaaagtattttgcAGCCTTGGCAGTGGGATGCATACTGTAGGTGTTGCTATCTAgctgttatttttttcctgATCATGGAATATACAAATTATTTCATGATCTCGACATAAGAATCCCTTGTGTTCTTGTGATCACTTAGGTTTGACAGAACATAACCCATCCAGTCTCATCATGATCATTAAATAACGCTGTAAATTGTGACATGGGGATAATCCTCTATAATCAAATGTCACTGCTAGAGtttaactattattattattattattattattattattattattattattattattataataaactgATGCAATAGCAACTAAAGAGTCCATGTAATATTACTAGACCTGCGCAAcgtatcaatatcgtgatatgagactagatatcggcttagattttggatatcgtaatatgacttaggttttgtcttttcctggttttaaaggctgcattacagtaaagtgatgtaattttctaaatttacaAGACTGTTCTCACAATTCTATTTTTTGCCTTCAACCTCTTAGTCATTATATTCACATTATTGATGATCATTTATCTAAAATTtaattgtgaagatattttgttaaagcaccaattgtcaaccctacaatatcgtcgcaatatcaacattgaggtatttggtcaataatatcgtgatatctgattttcacACACTATCACTATACCATTGGCATTCCTTTTATAGGGAGTGAGGGTGCACCTGGTGTTGTCAGCAGTTATTAAAGTTAACAAAATGGACACAAAGCAATTTCAGGTAGACATTATCTTATTTGTATGGATGATAGATCATTATCAGGCATGCCTTTTCTAATCATCAGAATACAATTTGAGTAATGTCAAAATTGATCATGATAACAAAGCTAACTATGTCGAGATCACGAGAGAATCATtttgaatattgtttttttatgagaTTAGGTCAGATAAATTAAGCAGTTAAACGTGGTAAAGTAACCTTAACTGCTCAATTTATCTGACGTGCACTCATGATCTAATCTCATTGTTTCATGATcacaaagagaaaataaaacgaCGGTGACACCCATAAACTTTACAACCTCCCATACTTTTAGACTTTCTTGATCTTTTTTTGATTGTGTGGAGGGCTGTTTGATGTGGCACTTGAGCATGTAGGAAAATGTAGTTCTTTCtgttgggaggggggggggtcacaGTATAGCCTTTAGGAACAAAAAGACATTCCTTAGGCTTTGTTTGCAATATCACTGGAGTCACTAAAATGCTGTTTTATTTGCAGACAAGCCTTTGTGCCTGTGCACTAGCATTTAATGGTTGCGCTATGTGTGTCCCTGTGCACTAACCATCCAGGTACAAGCACTCACCCTAAGGCTGTGCGTCTCTCCTTTTTCTTAAAGTGGGATTGGTTTCACTGCTGAAGCCTCATCCCAGGAGTAAGCTCGGCCGTTTTAGTTTTTTCAGACTAATGTGTCCGCAATGAAAGCATTTTGAAGAagtggtttatttttttcaatgatatattttttgtatttagtaGTGTACATGACATTAGCCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209980 lncRNA downstream 187268 14627750 ~ 14664671 (-) False G154948
TU209979 lncRNA downstream 187268 14662048 ~ 14664671 (-) True G154948
TU209985 lncRNA downstream 204870 14640102 ~ 14647069 (-) True G154953
TU209984 lncRNA downstream 215137 14633178 ~ 14636802 (-) True G154952
TU209938 lncRNA downstream 322820 14526134 ~ 14529119 (-) False cenpx
TU210075 lncRNA upstream 22070 14879627 ~ 14882905 (-) False ush1ga
TU210082 lncRNA upstream 37822 14895379 ~ 14895624 (-) True G155025
TU210102 lncRNA upstream 105676 14963233 ~ 14963846 (-) True G155039
TU210111 lncRNA upstream 127577 14985134 ~ 14985364 (-) True G155047
TU210145 lncRNA upstream 145499 15003056 ~ 15007022 (-) False LOC120573849
XM_039824441.1 mRNA downstream 23700 14795646 ~ 14828239 (-) True LOC120574214
XM_039824442.1 mRNA downstream 24550 14795646 ~ 14827389 (-) False LOC120574214
XM_039824443.1 mRNA downstream 25067 14795646 ~ 14826872 (-) False LOC120574214
XM_039824440.1 mRNA downstream 61167 14765734 ~ 14790772 (-) True LOC120574213
XM_039825807.1 mRNA downstream 103909 14740537 ~ 14748030 (-) True fscn2a
XM_039825829.1 mRNA upstream 12385 14869942 ~ 14874632 (-) True LOC120575176
XM_039823774.1 mRNA upstream 24731 14882288 ~ 14889482 (-) True ush1ga
XM_039825668.1 mRNA upstream 79411 14936968 ~ 14950077 (-) True LOC120575070
XM_039824984.1 mRNA upstream 92707 14950264 ~ 14954273 (-) True btbd17b
XM_039824989.1 mRNA upstream 106738 14964295 ~ 14969477 (-) False ccdc137
TU210042 other downstream 23719 14796026 ~ 14828220 (-) False LOC120574214
TU210021 other downstream 61161 14790056 ~ 14790778 (-) False LOC120574213
XR_005641939.1 other downstream 307947 14534971 ~ 14543992 (-) False LOC120574989
TU209766 other downstream 794627 14050738 ~ 14057312 (-) False med9
XR_005641817.1 other downstream 1429988 13335449 ~ 13421951 (-) False prkar1b
unassigned_transcript_852 other upstream 141216 14998773 ~ 15000144 (-) True LOC120574429
unassigned_transcript_853 other upstream 152241 15009798 ~ 15010340 (-) True LOC120573850
TU210305 other upstream 585607 15443164 ~ 15449503 (-) False metrnla
unassigned_transcript_854 other upstream 706576 15564133 ~ 15564204 (-) True trnae-cuc_25
XR_005641871.1 other upstream 860290 15717847 ~ 15724422 (-) False tecra

Expression Profile