RNA id: XM_039825721.1



Basic Information


Item Value
RNA id XM_039825721.1
length 1224
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC120575102
representative False

Chromosome Information


Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 14851939 ~ 14857580 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TCGCGCAGCCGCATTGCCATGTAAACACAACTGTCGCTACTGGCTGTGGTTtttatagctagctagctagctaggttaaaCTAAAAGAGGTGTAATTTTACCCGGGCTCTAGTTCTGGCTCTGAGATTGTTACATTGTTATCAAAGAAACAAGGCTAATTTTCTGCAATATGTGCTGTGGTCAGCTAATTAGGTGCATCAGCTAAGAAGGTTAGCTAGCCGTGACGTTAGCTTGTAACCTAACGTTAGCGTTTGTGACTGGCTTTTTAACTAACCTCGCTAGCTTAACGCTAGCTCGGTCTTTATGCAAAATAATAGCCAGTTACCTTAAATTGTCTGTGTAGTTAATTAtaacagattattattttagtgTTGCCAAACTGGTTAGTAGTATCACATCAATATTCAACATGATTGGCTAGTCAGGAAAGATTAGTTTGCTAACTCAGGTGATCGGCCATTGGTCGACAGAAaataagctaacgttaacaagTCGTCAACCGGTCAGGTCCTCCAGTCTGGTCAGAACACATAAAGGATTGAGTTAGTGTCATCATATGTTGACTGAAAACAGGAAACGGCAGCGCAGCGGTGGTGATGAGGAGAGTGGCCACCTGGTGCCTCAAGCcaaaaggcagagcagagctcatcctctctctcctgAGCCAGGCCGAGATGCGTGGGACTCGGAGGTACAAACCGCTGTCAGGCGAAATAACAGTAATACTGAAGAAACTTCATCCAACagtgagagcagcagcagcatcagcagtCCAGAACATGCAGCTGGGAGCTGTAGCAGTCAGTGTGTTGTGGGCCCCTGCAGTCCCCTCAGCTCCGGGGACTCCCCCGATCTGGCCCGCCCTACAAACCTGGTGTCCTACCTTCAGATCAACCGCATCCTGAAGCATGCCCACTTCCAGAGTCTGCAGAGCCGATGTCAACTTAGAGACACATGACGACCTAATGTCTCTCTGTCAGCCACCAGAGGACAGAGTCCCTGAGGGATGCCAGAGCACCACATGCTGATTCACTTCACTCAGCTCTTCCCATCTCCAGTTACTGTGATATCTTGCAGCTCTACATATCTGTGGATAGAGACCAGCTCCTGGTCAGGTatctggaggggggggggggattcattattcaaataaatcaaaagtGATAATCATTTTAGCAATAATAACTGTGtgatcaacttaaaaaaaatttgtgATCCACCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU209980 lncRNA downstream 189458 14627750 ~ 14664671 (-) False G154948
TU209979 lncRNA downstream 189458 14662048 ~ 14664671 (-) True G154948
TU209985 lncRNA downstream 207060 14640102 ~ 14647069 (-) True G154953
TU209984 lncRNA downstream 217327 14633178 ~ 14636802 (-) True G154952
TU209938 lncRNA downstream 325010 14526134 ~ 14529119 (-) False cenpx
TU210075 lncRNA upstream 22047 14879627 ~ 14882905 (-) False ush1ga
TU210082 lncRNA upstream 37799 14895379 ~ 14895624 (-) True G155025
TU210102 lncRNA upstream 105653 14963233 ~ 14963846 (-) True G155039
TU210111 lncRNA upstream 127554 14985134 ~ 14985364 (-) True G155047
TU210145 lncRNA upstream 145476 15003056 ~ 15007022 (-) False LOC120573849
XM_039824441.1 mRNA downstream 25890 14795646 ~ 14828239 (-) True LOC120574214
XM_039824442.1 mRNA downstream 26740 14795646 ~ 14827389 (-) False LOC120574214
XM_039824443.1 mRNA downstream 27257 14795646 ~ 14826872 (-) False LOC120574214
XM_039824440.1 mRNA downstream 63357 14765734 ~ 14790772 (-) True LOC120574213
XM_039825807.1 mRNA downstream 106099 14740537 ~ 14748030 (-) True fscn2a
XM_039825829.1 mRNA upstream 12362 14869942 ~ 14874632 (-) True LOC120575176
XM_039823774.1 mRNA upstream 24708 14882288 ~ 14889482 (-) True ush1ga
XM_039825668.1 mRNA upstream 79388 14936968 ~ 14950077 (-) True LOC120575070
XM_039824984.1 mRNA upstream 92684 14950264 ~ 14954273 (-) True btbd17b
XM_039824989.1 mRNA upstream 106715 14964295 ~ 14969477 (-) False ccdc137
TU210042 other downstream 25909 14796026 ~ 14828220 (-) False LOC120574214
TU210021 other downstream 63351 14790056 ~ 14790778 (-) False LOC120574213
XR_005641939.1 other downstream 310137 14534971 ~ 14543992 (-) False LOC120574989
TU209766 other downstream 796817 14050738 ~ 14057312 (-) False med9
XR_005641817.1 other downstream 1432178 13335449 ~ 13421951 (-) False prkar1b
unassigned_transcript_852 other upstream 141193 14998773 ~ 15000144 (-) True LOC120574429
unassigned_transcript_853 other upstream 152218 15009798 ~ 15010340 (-) True LOC120573850
TU210305 other upstream 585584 15443164 ~ 15449503 (-) False metrnla
unassigned_transcript_854 other upstream 706553 15564133 ~ 15564204 (-) True trnae-cuc_25
XR_005641871.1 other upstream 860267 15717847 ~ 15724422 (-) False tecra