RNA id: XM_039824442.1



Basic Information


Item Value
RNA id XM_039824442.1
length 1079
RNA type mRNA
GC content 0.54
exon number 3
gene id LOC120574214
representative False

Chromosome Information


Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 14795646 ~ 14828239 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GACGTGTTTCTACCCGAACCGGTCGAGGTGCACTCCCTGCCGGCCAGCTCAGTCATGGAGAGCCGCCTGTCTCGCAGCGCGATCCGACCTCTACAGCAAAAGATGATCGGGGGCTGCGTTATTGGCTGGGGAAGCCTGCGATCGACTGAATGCAACACATAGATCTGAAGGAAAGGATTATTTTATGGgttgcatttgatttttctgaCCTGCCCTATCCGGATTTCGGATTACTCAACATTCTTCGGAATGGAAGGACGGGATTTCGCTGCTCCGGCGCACCTCCTATCAGAGCGGGGCGCCTTGGTGCACCGAGCCGCCTCTCGGATCGCTCCCTCGGGCCACGGCTCTGTACAGCACGGCGGTCACTTCACGCCAGGGAAATACTACCCCTCGCACATACCAATGGCTCCCCACTCAGGCAGTGGATTGATGGGCAATTCCTCCGCCTCCTTCATGGGGACCTTTCTGGCCAGTAGTCTGGGTTCCCCCCCTTCCCACCCGTCTCACCCTTCCCGGCCGCCCTCCTCGCCGTCCTCACCCTCCTTCCGGGGCGGCCCCCACTCCAGCGCCTCGCAAATCTGGTTTCCCCATTCGCATGAAGGTACCTCAAATCacaccatgcacacaaacacatgcccCTCATTTGACGACATTGTCTGCATCAGGCACTATTCATGTCTAGGCAGTATCGGGGACAGAGCTTTGCAGGGTGTATTGTTACTCTGATATTGTGTATTTTTAGGCTGTGTTAGGTTTACAACAAAGCACGGCTTGTAATCATCTAGCAAGAGCCAGGCTCCCACCCTTTTATTTGTGCACCAAAATAGGCCCGGGCCCAGCATGTTTGGGATGGAATACAGTGCCATGGTTTCTAGATGGGGACACAGGGTCAAAAGTTCAGCCAAGGAATCTTGCGGTATTCGATTCACGTCAGCAGGAATGTCACTCAAGACTCTCTGAAGCAGCACGCGTGAACGCGAGCCAGTAAAAAGTTGCAGTGATTGCAGAGCTTTCAGCTGGTGTCTCCATCACTGCTTAATAGGGTAGTTCCCACCCGGCACTCAGGATTATAAAat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU209980 lncRNA downstream 130975 14627750 ~ 14664671 (-) False G154948
TU209979 lncRNA downstream 130975 14662048 ~ 14664671 (-) True G154948
TU209985 lncRNA downstream 148577 14640102 ~ 14647069 (-) True G154953
TU209984 lncRNA downstream 158844 14633178 ~ 14636802 (-) True G154952
TU209938 lncRNA downstream 266527 14526134 ~ 14529119 (-) False cenpx
TU210075 lncRNA upstream 52238 14879627 ~ 14882905 (-) False ush1ga
TU210082 lncRNA upstream 67990 14895379 ~ 14895624 (-) True G155025
TU210102 lncRNA upstream 135844 14963233 ~ 14963846 (-) True G155039
TU210111 lncRNA upstream 157745 14985134 ~ 14985364 (-) True G155047
TU210145 lncRNA upstream 175667 15003056 ~ 15007022 (-) False LOC120573849
XM_039824440.1 mRNA downstream 4874 14765734 ~ 14790772 (-) True LOC120574213
XM_039825807.1 mRNA downstream 47616 14740537 ~ 14748030 (-) True fscn2a
XM_039825808.1 mRNA downstream 65597 14717993 ~ 14730049 (-) True LOC120575160
XM_039825542.1 mRNA downstream 251653 14535280 ~ 14543993 (-) False LOC120574989
XM_039825721.1 mRNA upstream 26740 14854129 ~ 14857580 (-) False LOC120575102
XM_039825722.1 mRNA upstream 26740 14854129 ~ 14857577 (-) False LOC120575102
XM_039825829.1 mRNA upstream 42553 14869942 ~ 14874632 (-) True LOC120575176
XM_039823774.1 mRNA upstream 54899 14882288 ~ 14889482 (-) True ush1ga
XM_039825668.1 mRNA upstream 109579 14936968 ~ 14950077 (-) True LOC120575070
TU210021 other downstream 4868 14790056 ~ 14790778 (-) False LOC120574213
XR_005641939.1 other downstream 251654 14534971 ~ 14543992 (-) False LOC120574989
TU209766 other downstream 738334 14050738 ~ 14057312 (-) False med9
XR_005641817.1 other downstream 1373695 13335449 ~ 13421951 (-) False prkar1b
TU209391 other downstream 1815961 12973332 ~ 12979685 (-) False sun1
TU210040 other upstream 24550 14851939 ~ 14857557 (-) False LOC120575102
TU210041 other upstream 24550 14851939 ~ 14857557 (-) True LOC120575102
unassigned_transcript_852 other upstream 171384 14998773 ~ 15000144 (-) True LOC120574429
unassigned_transcript_853 other upstream 182409 15009798 ~ 15010340 (-) True LOC120573850
TU210305 other upstream 615775 15443164 ~ 15449503 (-) False metrnla

Expression Profile