RNA id: XM_039824575.1


Basic Information

Item Value
RNA id XM_039824575.1
length 3471
RNA type mRNA
GC content 0.41
exon number 9
gene id LOC120574278
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 15106757 ~ 15139853 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACTTCCCAAGGGTTTTACTGTCAATAAGTGTGTGTTCTTTGACATCTTTCCTGGTTAAAGGGTGTCTGTATATTATGTTTGTTTAGTTTACAGAAGGCGCTTTTCTCTAGTCAGTGATGCAGTAAAGCTGATTACAAGTCCCTTGCGTTTTAGGTTTATCAACCCTTAGCCCAGCCATTGTAAACAAAGCTGTTTCTCACATTAATTACTAGCCTTGCTTTCTTCAAAATCTGTTCTTAGGTTGTGCTCAGCTTCATTTGTCTTTCAATCCTCCCTATTTCTGACAGATTGTTATCTCTTCCTGTCTGTACACCATGTGTTCAGCACATCTGGGCTTAGTGTGTTTAATGGAGCTCCTATCAGGGGCACTGTCTGGGGTACAAAGAGTAAACCCTTGCTTCCAGCCTCCCTCCATCCCCACTGTCTCCTCTTCTCGATCTCCTTTCCTCCTGTAGATTATCCCATCTGTGGATTATCCCAATGGATTTCACATCTGGGCAGCTGTTCTAAGTGATGCAGTGAAGACAAAATGAAgcagagggggaatgacagcTGATTTAAACCTGAAATTAACTACACAGGCGTGAAATGGAGACCTCGCTTGTGGTTCTCTGTGAATGAAGAGCTTCTCTGCAGTTGTAAAATCTGATTACCAATGCCTGGGACTGTGTCTGTGGCTTAGTTTATAGTTGAACATGACCCTGCATTAAAATCAAATAGTTGAGTATAGCTTTTCTCCAGCATGCATCTCTCTGTCACTATCAGATGTTATGTCCCAGGTGAGCTGAGGTAAATTTACTCAATAATTCTACCCGCCTTGTTATTAATAAGAAGACCAGTCCTCCACACAAAAGTAGATTATAAAAAGCACGGGTCTCCAGTAAAATAATTAGAATTTGGGACAGTATGCAAAACATGTAAGTAAACTTGTTGCACCTGTACATCATTACTCAAAAACTGCATGGTGCAAACACATGCTGCATTTGAAAGGAAGGTAGATGATGATGGTGTCCTAGAAAATGCTCATACATTTATACATATTTGATGAGAGGAAGCATAAACAaaatcaattcaatttaaaCAGCATCCTGTTATTTTCCCCAACTGTTAATTATGCATGCACATGGAAAATGATTaagttatttctttttttttgccttgtTTTTATGTTCTGGCCTGGGGAAGACTAAGTGCACAGAGACTGCGTGACCTTGACCCCTGATCGTTTATGCATGCACATTGGCTGGTCTCCATGGATGAATTTTAGAGCATGAAAATATTTAAGAGATTTAATCCATGGTCAGCAAAGCAAGCTCTACATGGGCACCAGTGACTTTTGTGTGTCTCCAAACAAGTTTATTGTTAACCAAACCAAGGATTTCCTCAGTGCAGATGTTGCACACTATTATTTGTTCTGCAGTCCGAATCTACCAAACCCTTTTCAACAGTCTTTGACAATCTGCAAGCGTTCTTTGACCACCATGCAAATGCAGATCAAGGGCTTGCTGCAGTTCTCGTTGCCCTTCTTCCCCACTGCTGAGAGAGACCTTTTGGGGATCCAGCGACTGCTGAACTCCACCGAGTTCAGTCTCCACCAGCTAACAGCATTGCTCGACTGCCGCGGGCTACACAAGGACTACCTGGATGCCCTAATGGGTGTGTGCTATGATGGGGTGGAAGGGCTCCTCTACCTCTCTTTGTTTTCTCTGCTGGCTGCCTGCGCACTCTCTGCCATGCTGTGTGCGATTTTTAGAGTGTGGACACTAATAGGCAGCAGGGACAAAGAGTATGACGACATAGATGAGGAGGACCCGTTCAACCCAGAAGCGCGGCGGATATCCTACAACCCCAGAAGGTCCAACATCCATAGTTTCTGTAGCTATACCAGCAGCCTCGGTAACCAGGCCAGCCTTCATCCACCTCCGCAATCTGCCTCTAATGTCATGCCACCTCCTGAATACATGAATCAGTCCATGCTGTTTGGAGGGAGTCCTCGATATGAAAACGTGCCGCTGATAGGGAGAGGATCCCCACCTCCCTCGTACTCGCCCAGTATGAGGACCACTTATCTATCTATGACTGACGCCCAGATCAGACACTTTGGGACTGACTTCCAGGTGTAACCTGCTACCTACGGAATCCGTTTTAGAGAAGCACTTTCTGAGACGCTGCGTTTATACCAAGGAGGTTGGCATAATCTCGCTATTCCAATCTGAGACATGAAAGCAGGCCATATGAGGCATTTACCGCAGTAAGACACCAATGCAGTGCTCAGAAAGCCCTGCATGCAGTTCTGAACAGAGAGGACCTGTACAGGTTCCTCTCAAGACTGTTGTGGATGTTGTCATGATGTATGGAAACACTGTTGCTCCAATATAAGCATTTATATAAGCCAAATCAAGAACCTTTGAACTGATTtgatgaaaaaaatgtttttgcttttttctgtATTCTGGTAGCCTGCAAGGATATGATCATCGATACGGTCTTTTGGAAGACTGAATATGACCCATAGCACTTCCatcattgtgattttttttctaaatcccTACTCTTTGGCAGTTACTTAATTCCTTCATATTCTGCCTTTGTGCAATTTGTAATGGTGCTAAATGAAATCAAACCATATTTTCAACTTTtccaaataataaacaaatttaaaactttaaagttgaaaatttaaagttgttctaAGATCCATCTACCCTCATTATCTTGTAAATGAGAAAGTCTTCTCTTCAGTGTTGGATAAATCTGCTGAATGCTGTTTTCTGTGTTGGATCATGTATCAAACTAAATTAATGTTTGATCATAAATTCTGTATTTAcacttgtgtgttgttgtgtactTCGTTTCTACTTTCTACTTGTAATTGTTTAAGCTCTTACTCTCACTCAAGTAACCCAGAATTGCCTCTAGTAATTGGATTAGGCTGATTGGGATTTTTAGTGTCCCGTACCTGAGGATGTCACACGGGGCAATATGTTCAGCCAGTTTCATACATCTAATAAGACTGGCAGAAAATGTGTCTCCACTCCATAAAACATCTTACAAATAAATTCAAGAGAGATATTAGCAATGACAGTTATGTCTTGAATAATGCACAACATGAAAGAGTAACCAGGCTAAACAGTGTCCTCACTGGTTTTAAGGTTTCAAAGCTTGTGCTCTATTGCGCCTGTAACCCCCATCCAACAGTGATGTCATGGTGTCCTGCacaatgtatgcatgcatgtgcttAAATGGGCATACTTGTAGTACATACTATAAGTACTtgtttgacatttgtttttgcACTATGCTTTATACTGTGTGGtttgtctatctatctatctatctatctatccatccatccatccatccatccatccatccatcacagTGTAAGGTTACTCCTTACCCCACAACACAATGTAAACACATCTTACAGTTATCATTTCTACACGATTAAATGAAATCCGTTTAACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210145 lncRNA downstream 99735 15003056 ~ 15007022 (-) False LOC120573849
TU210111 lncRNA downstream 121393 14985134 ~ 14985364 (-) True G155047
TU210102 lncRNA downstream 142911 14963233 ~ 14963846 (-) True G155039
TU210082 lncRNA downstream 211133 14895379 ~ 14895624 (-) True G155025
TU210075 lncRNA downstream 223852 14879627 ~ 14882905 (-) False ush1ga
TU210204 lncRNA upstream 18966 15133957 ~ 15139853 (-) False LOC120574278
TU210217 lncRNA upstream 41438 15156429 ~ 15162435 (-) True G155106
TU210240 lncRNA upstream 197089 15312080 ~ 15313592 (-) True G155126
TU210269 lncRNA upstream 253238 15368229 ~ 15404569 (-) True G155151
TU210385 lncRNA upstream 411958 15526949 ~ 15527605 (-) True G155232
XM_039824579.1 mRNA downstream 132 15101981 ~ 15106625 (-) False LOC120574279
XM_039824577.1 mRNA downstream 142 15101981 ~ 15106615 (-) True LOC120574279
XM_039824578.1 mRNA downstream 609 15101981 ~ 15106148 (-) False LOC120574279
XM_039824962.1 mRNA downstream 6166 15048332 ~ 15100591 (-) False baiap2a
XM_039824961.1 mRNA downstream 6167 15044959 ~ 15100590 (-) False baiap2a
XM_039825760.1 mRNA upstream 219371 15334362 ~ 15346560 (-) True hs3st3b1a
XM_039825464.1 mRNA upstream 276747 15391738 ~ 15393203 (-) True LOC120574947
XM_039825349.1 mRNA upstream 289929 15404920 ~ 15415610 (-) False LOC120574866
XM_039825348.1 mRNA upstream 289929 15404920 ~ 15415610 (-) True LOC120574866
XM_039823820.1 mRNA upstream 302054 15417045 ~ 15424203 (-) True LOC120573906
unassigned_transcript_853 other downstream 96417 15009798 ~ 15010340 (-) True LOC120573850
unassigned_transcript_852 other downstream 106613 14998773 ~ 15000144 (-) True LOC120574429
TU210040 other downstream 249200 14851939 ~ 14857557 (-) False LOC120575102
TU210041 other downstream 249200 14851939 ~ 14857557 (-) True LOC120575102
TU210042 other downstream 278537 14796026 ~ 14828220 (-) False LOC120574214
TU210305 other upstream 328173 15443164 ~ 15449503 (-) False metrnla
unassigned_transcript_854 other upstream 449142 15564133 ~ 15564204 (-) True trnae-cuc_25
XR_005641871.1 other upstream 602856 15717847 ~ 15724422 (-) False tecra
TU210508 other upstream 628684 15743675 ~ 15744117 (-) False LOC120574537
TU210507 other upstream 632326 15747317 ~ 15749430 (-) False LOC120574502

Expression Profile