RNA id: XM_039825870.1


Basic Information

Item Value
RNA id XM_039825870.1
length 1902
RNA type mRNA
GC content 0.52
exon number 4
gene id metrnla
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 15443124 ~ 15449517 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTAGAGGCGTGCTGAGGAGAGCCTGGTTATGGGGCTTCAGCTGCATATGCTCAGCATGTGCCATGAGTTACTTCAGATCTATGGCACATTTGAATTTCAGCATCTCATTTTCAGGGAACTGGGTGTTTCTCCTCCAGAGTCAAACCACTAGCTTGGCATGCATATGCTGGTGGACTGCTGATGGCTTCCTGCCTCTGGCTTTGCCACAGAATGACTGACAGACTGGAGTTTTCAAACCCTGACCAGGCATTAAGTTCTGGAGGGAGTCGTTTGGTCATGCTGGCGCCAGAGTCCGAAGTGCTGCCCGGACAAGTCTCTTCCAGTCTTTTTGGTGGCTTGAAAGCAAGGGGAGGTTCGGTGCGTGACCTGCATTTGCACTTGCATGCAGCAGGCCCAGCTACTGTTGCTGCCGTTGTCTGCCCAGAAGCCCCTCTGTCCCTCCATTCATCCATTTCTGCTTCCAAACTCTTCCCAAAGGCAGCCTGCCAGTGGTGCATTTTGCCAAAGCTCTGGGAGGAACAATGTGGTATGGGGGGAGAAGTGTGTGTTGGAGCTGAGGTCATTTTGGTTGCTCAGGCTCGTGACTGGTCATGCAGCCAGTCTTGCGCACAGACGGCCCTGAATGCTTCAGGAGGAATGTGGTCTAATGTCCTTACAGTCTGCCAGAGGTCTTCACCTTGTGGTCTGACTCATGAAGGCCACGCCAGGGATGTGGAGCAGGTGTACTTGCGTTGCTCCCAAGGCTCTCTGGAGTGGCTCTATCCCACGGGGGCCATCATTGTTAACCTCCGACCCAACACGGTCTCCCCTGCCGCCGCCCGCCTCTCTGTCTGCATCAAACCCTCTGCACACTCCAGTGGCACCAACATCTACCTGGACCGTAATGGCAAGCTGCGGTTACTGCTGCGTGATCAGGACCAAGCTCAGGGCAAGGTGCAGTGCTTCAGTATCCAGGAGGGGGCTGTCTTCATCGAGGCCGTCCCGCACATGGACATCAGCCGCCGCATCACGGCGTTCCAGTATGAGCTGGTCAACGACAGGCTGGGGCCATTGGCACACTCACAGGGTGCACCCTGTCAGCCCTGCAGTGACACCGAGATGCTTCTAGCTGTCTGCACCAATGACTTTGTGGCACGGGGCAGCATTAAGAAGGTGGAGCAGGAAGAGGAGCACTCGTCTGTGACTGTGGAGATCAGCCGCCTCTACAGACAGAAGACCCAGGTTTTTGTATCTGGGGGTGTCAGGGTACGGAGGTGGACTGGCCATATCAAAATGCCCCTTCAGTGTAGGGTGAGGTTTGGGGAGGGCGAGTTCCTCTTCACCGGGACAGTGAGGTTTGGGGAGGCCTGGATGGGATGCGCCCCACGCTACAAAGACTTCCTGCAGTTGTATCACGAGGCGCAGGATCGGGGGACCAACCCCTGTCACGTGGACACATACTAAGTGTGTTACCTGCCCACGCTTGGAAATGTGACATGTCCTTACTGGGTGGGGAGGAGAGTTCATGCTTAGGAGAGAACGAGGCTTACAGACTGGCCCAGTGGCAgagcctctctcctctcctgcccTCTCTTGACTCTTTGGAGACAAAGACTGGAGCTCCTGAATGTTGCTAAGCAGCAAGCTGGATGGACTCTGCTCTCAAAGTCGAACGTGATGCAACGTGGAATGTGTTCAGACTGCCTTTCTCGCAGACAAGGAACTCCCAGGTTTTAAATGTAGCAAACccccatttgttttttatttgtataaaatGTGAATGAACATTGTATATTTTGAAGCTCTGCGTGCTTTGTAAAAAAAGTTTGATGTACAGTTTTGAAGTTATTTCTTATGACAGAAATGTATAAAGTGAAAGcctcttatttttattttgtttaaaaaatgatttgCAATTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210269 lncRNA downstream 38555 15368229 ~ 15404569 (-) True G155151
TU210240 lncRNA downstream 129532 15312080 ~ 15313592 (-) True G155126
TU210217 lncRNA downstream 280689 15156429 ~ 15162435 (-) True G155106
TU210204 lncRNA downstream 303271 15133957 ~ 15139853 (-) False LOC120574278
TU210145 lncRNA downstream 436102 15003056 ~ 15007022 (-) False LOC120573849
TU210385 lncRNA upstream 78604 15526949 ~ 15527605 (-) True G155232
TU210389 lncRNA upstream 93212 15541557 ~ 15544017 (-) True G155234
TU210397 lncRNA upstream 102659 15551004 ~ 15632836 (-) True G155239
TU210400 lncRNA upstream 105698 15554043 ~ 15554886 (-) True G155242
TU210482 lncRNA upstream 234024 15682369 ~ 15691652 (-) True G155295
XM_039823820.1 mRNA downstream 18921 15417045 ~ 15424203 (-) True LOC120573906
XM_039825349.1 mRNA downstream 27514 15404920 ~ 15415610 (-) False LOC120574866
XM_039825348.1 mRNA downstream 27514 15404920 ~ 15415610 (-) True LOC120574866
XM_039825464.1 mRNA downstream 49921 15391738 ~ 15393203 (-) True LOC120574947
XM_039825760.1 mRNA downstream 96564 15334362 ~ 15346560 (-) True hs3st3b1a
XM_039823872.1 mRNA upstream 28014 15476359 ~ 15505454 (-) True tbcd
XM_039823873.1 mRNA upstream 28014 15476359 ~ 15505100 (-) False tbcd
XM_039823880.1 mRNA upstream 59381 15507726 ~ 15509964 (-) True LOC120573957
XM_039823877.1 mRNA upstream 64007 15512352 ~ 15522509 (-) False epn3a
XM_039823879.1 mRNA upstream 64007 15512352 ~ 15522509 (-) False epn3a
unassigned_transcript_853 other downstream 432784 15009798 ~ 15010340 (-) True LOC120573850
unassigned_transcript_852 other downstream 442980 14998773 ~ 15000144 (-) True LOC120574429
TU210040 other downstream 585567 14851939 ~ 14857557 (-) False LOC120575102
TU210041 other downstream 585567 14851939 ~ 14857557 (-) True LOC120575102
TU210042 other downstream 614904 14796026 ~ 14828220 (-) False LOC120574214
unassigned_transcript_854 other upstream 115788 15564133 ~ 15564204 (-) True trnae-cuc_25
XR_005641871.1 other upstream 269502 15717847 ~ 15724422 (-) False tecra
TU210508 other upstream 295330 15743675 ~ 15744117 (-) False LOC120574537
TU210507 other upstream 298972 15747317 ~ 15749430 (-) False LOC120574502
TU210517 other upstream 364713 15813058 ~ 15815369 (-) True G155323

Expression Profile