RNA id: TU210400


Basic Information

Item Value
RNA id TU210400
length 492
lncRNA type inter_gene
GC content 0.58
exon number 3
gene id G155242
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 15554043 ~ 15554886 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGGCAGCACTGGGCATGGCCTGGTACTGTGGTGGTGCAGTCTGCCCAGGCGGGTTCATATAGATGTTGTGCATAGGTGAACCCTCCACAGAACCAGCAGGACTGAAGGTGCCTGGATAGCTCGGTGGAGCACCAGGCTGGTACACCACCCCTCCTGCCACATTGGGGGGCAAAGACTGCATCTGGGCGTAAGGCAGCGAGAAAGCAGGCATTTGGGCTCTCATCTGGACTGTGTGTTTCTGCTGCTCCAGACGCATCTGCCTTTCCTTTTCCTGCTCCTGGAGGCGCTGGATGGCCAGCTGTCGTTGCATCTCCAGGTACTCCTGTTTCTTCTGCCTCATGATCTCCAGTTTTTGTGCCAGCTGGATCTGCCTCTGTCTCTCCGCTTCCTCTGCAGCGCGACGCAGCTTCTCTCTGTGTTCGTCCCGAAGTGCGTTGAGGGCTGCCCGAGCATCACGCACCTGAGCCAACTTGTCCTGCAGCCCTTCATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210389 lncRNA downstream 10026 15541557 ~ 15544017 (-) True G155234
TU210385 lncRNA downstream 26438 15526949 ~ 15527605 (-) True G155232
TU210269 lncRNA downstream 149474 15368229 ~ 15404569 (-) True G155151
TU210240 lncRNA downstream 240451 15312080 ~ 15313592 (-) True G155126
TU210217 lncRNA downstream 391608 15156429 ~ 15162435 (-) True G155106
TU210482 lncRNA upstream 127483 15682369 ~ 15691652 (-) True G155295
TU210486 lncRNA upstream 139887 15694773 ~ 15695558 (-) True G155298
TU210500 lncRNA upstream 174047 15728933 ~ 15774308 (-) True G155307
XR_005641874.1 lncRNA upstream 268105 15822991 ~ 15825654 (-) True LOC120574547
TU210521 lncRNA upstream 269007 15823893 ~ 15825649 (-) False LOC120574547
XM_039826254.1 mRNA downstream 19517 15530445 ~ 15534526 (-) True rsad1
XM_039826253.1 mRNA downstream 19766 15530445 ~ 15534277 (-) False rsad1
XM_039823877.1 mRNA downstream 31534 15512352 ~ 15522509 (-) False epn3a
XM_039825157.1 mRNA upstream 2194 15557080 ~ 15558737 (-) False zgc:103625
XM_039825156.1 mRNA upstream 2194 15557080 ~ 15558668 (-) True zgc:103625
XM_039825320.1 mRNA upstream 50617 15605503 ~ 15645622 (-) False gcgra
XM_039825322.1 mRNA upstream 50617 15605503 ~ 15645622 (-) False gcgra
XM_039825321.1 mRNA upstream 50617 15605503 ~ 15619968 (-) True gcgra
TU210305 other downstream 104540 15443164 ~ 15449503 (-) False metrnla
unassigned_transcript_853 other downstream 543703 15009798 ~ 15010340 (-) True LOC120573850
unassigned_transcript_852 other downstream 553899 14998773 ~ 15000144 (-) True LOC120574429
TU210040 other downstream 696486 14851939 ~ 14857557 (-) False LOC120575102
unassigned_transcript_854 other upstream 9247 15564133 ~ 15564204 (-) True trnae-cuc_25
XR_005641871.1 other upstream 162961 15717847 ~ 15724422 (-) False tecra
TU210508 other upstream 188789 15743675 ~ 15744117 (-) False LOC120574537
TU210507 other upstream 192431 15747317 ~ 15749430 (-) False LOC120574502
TU210517 other upstream 258172 15813058 ~ 15815369 (-) True G155323

Expression Profile